2024
- 9th BRICS Young Scientists Forum, Sochi, Russia, November 25-29, 2024
Morozova N.E., Oral report on the topic "Bacterial Defense Systems and Their Application for in vitro Diagnostics"
- "Polytechnic Life Sciences, St. Petersburg, Russia, October 22-25, 2024
Roshchektaeva V.D., Nesterenko V.A., Khodorkovsky M.A., Morozova N.E., Oral report on the topic "DNA binding of RecN and RecA proteins of E. coli"
- "Polytech Life Sciences", St. Petersburg, Russia, October 22-25, 2024
Nesterenko V.A., Roshchektaeva V.D., Khodorkovsky M.A., Morozova N.E., Oral report on the topic "Localization of the RecN protein and its role in the mechanism of regulation of the SOS response in E. coli cells"
- II Scientific and Practical Conference «Clinical diagnostics and personalized medicine», Moscow, Russia, September 10-11, 2024
Svetlana Kozlova, Natalia Morozova, Yaroslav Ispolatov, Konstantin Severinov, Oral presentation on the topic "Universal diagnostic platform based on CRISPR-Cas and isothermal amplification technologies"
- XXIII Winter Youth School on Biophysics and Molecular Biology, Repino, February 26 – March 2, 2024
Malinnikova L.N., Morozova N.E., Khodorkovsky M.A., Effect of copy number of the CfrBI restriction-modification system on the protection of Escherichia coli cells from phage λ viral infection
- V All-Russian Conference of Young Scientists "Viral Infections - from Diagnostics to Clinic", Research Institute of Influenza, St. Petersburg, Russia, April 11-12, 2024
Vedyaikin A.D., Alekseev A.A., Arseniev A.N., Vorobyova V.D., Biralo N.V., Kungurova L.A., Melnikov A.S., Serdobintsev P.Yu., Kurdyumova I.V., Krivoruchko A.B., Khodorkovsky M.A., Morozova N.E. Oral report: "The reaction of isothermal amplification of RPA, as an important component of a rapid and accurate diagnostic system for detecting infectious diseases of various origins"
- BioTech-2024, Saint Petersburg, Russia, April 17-19, 2024
1. D. Yu. Orel, V. A. Nesterenko, M. A. Afanasyeva, L. N. Malinnikova, N. E. Morozova, MODIFICATION OF BACTERIOPHAGES FOR STUDYING THE MECHANISMS OF BACTERIAL DEFENSE SYSTEMS AGAINST VIRUSES (oral report)
2. A. O. Prichepa, L. N. Malinnikova, N. E. Morozova, INFLUENCE OF THE NUMBER OF RESTRICTION SITES ON THE EFFICIENCY OF RM SYSTEMS (oral report)
- Beyond the Z-ring, Alcobasa, Portugal, 14-17 May 2024
1. Natalia Rumyantseva, Daria Golofeeva, Alexey Vedyaykin, Michael Khodorkovskii, Influence of the SulA protein on bacterial division during the SOS response, Archaeal and Bacterial cell division
2. Alexey Vedyaykin, Natalia Rumyantseva, Daria Golofeeva, Aizilya Khasanova, Michael Khodorkovskii, The mechanisms of minimal bacterial cell division, Archaeal and Bacterial cell division. Beyond the Z-ring, Alcobasa, Portugal, 14-17 May 2024
2023
- III ALL-RUSSIAN SCIENTIFIC AND PRACTICAL CONFERENCE FOR YOUNG SCIENTISTS "BIOTECHNOLOGY AND SAFETY IN THE TECHNOSPHERE" April 11-12, 2023.
E.A. Drozdova, M.V. Yakunina, D.A. Antonova, The influence of the Gp20 protein of the phiKZ bacteriophage on the vital activity of bacterial cells
- 4th RUSSIAN INTERNATIONAL CONFERENCE ON CRYOELECTRON MICROSCOPY, June 4 - June 7, 2023
Yakunina MV - invited lecturer: The early stage of bacteriophage phiKZ infection development. Conference language – English.
- 4th Russian Microbiological Congress, Tomsk, 2023
A. Tumi, D. A. Antonova, A. S. Nichiporenko, V. A. Kasyanov, M. Dmitrieva, I. V. Kurdyumova, M. V. Yakunina, STUDY OF THE INFLUENCE OF EARLY PROTEINS OF BACTERIOPHAGE PHIKZ ON THE DYNAMICS OF BACTERIA GROWTH
- ВAll-Russian scientific face-to-face and correspondence conference for students, postgraduates and young scientists. Saint Petersburg, 2023
Maryam D., Kasyanov V.A., Kurdyumova I.V., Yakunina M.V. STUDY OF EARLY GENES OF BACTERIOPHAGE PHIKZ
- VI Innovative St. Petersburg Medical Forum "Medicine 2023 - Science, Innovation and Practice", May 18-20, 2023, Federal State Budgetary Institution "V. A. Almazov National Medical Research Center", St. Petersburg, Russia
Morozova N.E., Potyseva A.S., Vedyaikin A.D., Arseniev A.N., Melnikov A.S., Serdobintsev P.Yu., Kurdyumova I.V., Krivoruchko A.B., Yakunina M.V., Khodorkovsky M.A. Oral report "Creation of a medical diagnostic system based on CRISP-Cas technology"
- IV All-Russian Conference of Young Scientists "Viral Infections - from Diagnostics to Clinic", Research Institute of Influenza, St. Petersburg, Russia, April 13-14, 2023
Morozova N.E., Potyseva A.S., Vedyaikin A.D., Arseniev A.N., Melnikov A.S., Serdobintsev P.Yu., Kurdyumova I.V., Krivoruchko A.B., Yakunina M.V., Khodorkovsky M.A. Oral report "Development of a universal diagnostic platform based on isothermal amplification and CRISPR-Cas technologies"
- All-Russian Conference "From Microbiology to Genetic Technologies" September 22-25, 2023, Novosibirsk, Russia
Oral presentation, "The division protein FtsZ as a promising target for antibiotics"
- 26th Pushchino School-Conference of Young Scientists "Biology - Science of the 21st Century", April 10-13, 2023, Russia
1. Rumyantseva Natalia Antonovna, oral report "The role of positioning systems in the regulation of the Z-ring during the restoration of division after the SOS response in Escherichia coli bacteria"
2. Golofeeva Darya Maksimovna, poster report "Application of a two-hybrid system for assessing the interactions of Escherichia coli division proteins during the SOS response"
- Conference "Genomics, Metagenomics and Molecular Biology of Microorganisms", September 23-24, 2023, Russia
1. Rumyantseva Natalia Antonovna, poster presentation “The ability of the SulA protein to dimerize and its effect on the interaction of FtsZ with partner proteins”
2. Khasanova Aizilya Airatovna, poster presentation “Determination of interactions between the division proteins of Acholeplasma laidlawii and Mycoplasma gallisepticum using a two-hybrid system”
- XXII Winter Youth School on Biophysics and Molecular Biology, Repino, February 27 – March 4, 2023
1. Morozova N.E., Kirillov A.A., Khodorkovsky M.A., Relative amounts of methyltransferase and restriction endonuclease of the restriction-modification system affect the effectiveness of protection against bacteriophage
2. Rumyantseva Natalia Antonovna, poster presentation “Regulation of the FtsZ protein during the SOS response in Escherichia coli bacteria”
3. Golofeeva Daria Maksimovna, poster presentation, “Elucidation of the properties of FtsZ proteins of mycoplasmas”
4. Vedyaikin A.D., oral presentation, “Share, bacteria, big and small!”
5. Potysyeva A. S., Arseniev A. N., Melnikov A. S., Serdobintsev P. Yu., Khodorkovsky M. A. Poster presentation, Detection of specific DNA sequences based on the collateral activity of the CRISPR Cas12a system
- All-Russian Conference "From Microbiology to Genetic Technologies", Novosibirsk, September 22–25, 2023
Kirillov A.A., Malinnikova L.N., Gibhardt J., Khodorkovsky M.A., Morozova N.E., Effect of the ratio of proteins of two different restriction-modification systems on the protection of bacteria from viruses.
- III ALL-RUSSIAN SCIENTIFIC AND PRACTICAL CONFERENCE FOR STUDENTS, POSTGRADUATE STUDENTS AND YOUNG SCIENTISTS OF THE POLYTECHNIC LIFE SCIENCES, OCTOBER 24-27, 2023, SPbPU, St. Petersburg
Roshchektaeva V.D., Khodorkovsky M.A., Morozova N.E., Localization and DNA binding of the RecN protein E. coli
2022
- 5th Pushchino School-Conference of Young Scientists "Biology - Science of the 21st Century", April 18-22, 2022, RussiaGolofeeva D.M., Rumyantseva N.A., Vedyaikin A.D., poster presentation "CREATION OF ESCHERICHIA COLI STRAINS WITH DELETIONS OF GENES SLMA, MINC, TOLC"
Rumyantseva N.A., Golofeeva D.M., Vedyaikin A.D., poster presentation "REGULATION OF DIVISION OF ESCHERICHIA COLI IN THE PROCESS OF SOS-RESPONSE"
- VII CONGRESS OF BIOCHEMISTS, MOLECULAR BIOLOGISTS AND PHYSIOLOGISTS OF RUSSIA, Sochi, October 3-7, 2022
1. Golofeeva D.M., Rumyantseva N.A., Khodorkovsky M.A., Vishnyakov I.E., Vedyaikin A.D., poster presentation “The role of the Min system in restoring DNA segregation and cell division after the end of the SOS response of Escherichia coli”
2. Rumyantseva N.A., Golofeeva D.M., Ponomareva E.V., Khodorkovsky M.A., Vishnyakov I.E., Vedyaikin A.D., poster presentation “Determination of the critical concentration of the FtsZ protein of mycoplasmas”
- VIII Youth School-Conference on Molecular Biology and Genetic Technologies of the Institute of Cytology of the Russian Academy of Sciences, St. Petersburg, October 11-14, 2022
Rumyantseva N.A., Belenkaya D.G., Golofeeva D.M., Vishnyakov I.E., Vedyaikin A.D., oral report “PROPERTIES OF PROTEINS PRESUMABLY PARTICIPATING IN THE DIVISION OF UREAPLASMA PARVUM”
- LifeSciencePolytech Conference, November 17-19, 2022, Russia
1. Golofeeva D.M., Rumyantseva N.A., Vishnyakov I.E., Vedyaikin A.D., oral report, "Visualization of FtsZ structures in the SOS response state using expansion microscopy
2. Shutov V.M., D.G. Belenkaya, A.D. Vedyaikin, oral report, "Expression and isolation of FtsK, SMC, UPA3_RS02030, UPA3_RS01765 proteins from U. Parvum"
3. Golofeeva D.M., Rumyantseva N.A., Vedyaikin A.D., Russia, oral report, "ASSESSMENT OF THE INTERACTION OF DIVISION PROTEINS OF Escherichia coli IN THE SOS RESPONSE"
- Conference Bacterial cell biophysics: DNA replication, growth, division, size and shape, December 10-16, 2022, Israel
1. Vedyaikin A.D., Rumyantseva N.A., Golofeeva D.M., Vishnyakov I.E., poster presentation "Some properties of FtsZ proteins of Acholeplasma laidlawii and Mycoplasma gallisepticum"
2. Rumyantseva N.A., Golofeeva D.M., Vedyaikin A.D., poster presentation "SulA inhibits the cell division in Escherichia coli by a mechanism different from sequestration"
- FEBS OPEN BIO 2022
M Antipova, V Kulikova, A Kropotov, A Yakimov, K Nerinovski, A Nikiforov. The role of NAD biosynthesis in maintaining pluripotency and differentiation of mouse embryonic stem cells (FEBS OPEN BIO 2022 vol 12 , pp 300-301)
- The problem of antibiotic resistance of microorganisms and ways to solve it, Saint Petersburg, Russia, June 16-17, 2022
1. Yakimov A.P. (SPbPU, St. Petersburg) FIGHTING ANTIBIOTIC RESISTANCE BY INHIBITING THE SOS RESPONSE
2. Belenkaya D.G., Rumyantseva N.A., Golofeeva D.M., Vishnyakov I.E., Vedyaikin A.D., oral report “Determination of the properties of the SMC protein Ureaplasma parvum”.
3. O.A. Kotovskaya, D.A. Antonova, N.E. Morozova. INFLUENCE OF THE AMOUNT OF REGULATORY PROTEIN IN CELLS WITH A TYPE II RESTRICTION-MODIFICATION SYSTEM ON THE EFFICIENCY OF PROTECTION AGAINST BACTERIOPHAGE
2021
- International Youth Scientific Forum "LOMONOSOV-2021"
Antonova D.A., Belousova V.V., Orekhova M.M., Yakunina M.V., Use of fluorescence microscopy in the study of cell infection with bacteriophage phiKZ
- Online conference “Helicases and Nucleic Acid-Based Machines: Structure, Mechanism and Regulation and Roles in Human Disease”, July 2021, 6-9
Nikita Vaulin, Anna Shiriaeva , Ekaterina Semenova, Konstantin Severinov, Motif I of the Cas3 SF2 helicase domain regulates directionality of Cas3 movement during CRISPR interference and primed adaptation
- 45th FEBS Congress, Molecules of Life: Towards New Horizons, Ljubljana, Slovenia, July 3–8, 2021
1. Maikova, N. BerezenkovaI, J. Peltier, K. Severinov, O. Soutourina. Clostridioides difficile CRISPR-Cas regulation by biofilm-related secondary messenger c-di-GMP
2. M. Orekhova, , I. Vishnyakov, , D. Antonova, V. Belousova, I. Kurdyumova, T. Artamonova, M. Yakunina, The nucleus-like shell takes part in the regulation of the phiKZ bacteriophage genome transcription
3. Vedyaykin, N. Rumyantseva, E. Ponomareva, I. Vishnyakov, M. Khodorkovskii, Identification of genes presumably involved in cell division of Ureaplasma parvum
- CRISPR 2021 – international conference, 1-10 июня, Paris, on line
1. P. Selkova, A. Vasileva, O. Musharova, M. Kazalov, M. Khodorkovskii, K. Severinov, I. Fedorova, Position of Deltaproteobacteria Cas12e nuclease cleavage sites depends on spacer length of guide RNA
2. Arseniev A, Fedorova I, Selkova P, Pobegalov G, Goryanin I, Vasileva A, Musharova O, Abramova M, Kazalov M, Zyubko T, Artamonova T, Artamonova D, Shmakov S, Khodorkovskii M, Severinov K, Characterization of Clostridium cellulolyticum Type II-C CRISPR–Cas system
- International Conference Physicist.SPb, October 18–22, 2021
1. Kirillov A. A., Morozova N. E., Khodorkovsky M. A., Severinov K. V., Effect of copy number of components of the type II restriction-modification system on bacterial defense
2. Serdakov M. D., Alekseev A. A., Pobegalov G. E., Yakimov A. P., Baitin D. M., Khodorkovsky M. A., Conformational transitions of the RecA filament on single-stranded DNA in the presence of RecX protein
- 3rd Russian Microbiological Congress, Pskov, September 26 - October 1, 2021
Maikova A. The role of the CRISPR-Cas system in biofilm formation and adaptation to stress in the pathogenic bacterium Clostridioides difficile
- VIII International Scientific and Practical Conference of Young Scientists within the framework of the OpenBIO open communications platform, science city Koltsovo, October 5-7, 2021
Maikova A., Berezenkova N. Regulation of the CRISPR-Cas system of the pathogenic bacterium Clostridioides difficile under conditions of biofilm formation
- VIII International Scientific and Practical Conference of Young Scientists: Biophysicists, Biotechnologists, Molecular Biologists and Virologists
Alekseev A.A., Znobishcheva E.A., Pobegalov G.E., Yakimov A.P., Baitin D.M., Khodorkovsky M.A., Study of the mechanisms of regulation of RecA nucleoprotein filaments by the RecX protein using the optical capture method (VIII International Scientific and Practical Conference of Young Scientists: Biophysicists, Biotechnologists, Molecular Biologists and Virologists - 2021: Collection of abstracts / ANO "Innov. center Koltsovo". - Novosibirsk: IPC NSU, 2021. - 424 p)
- RAP Conference
M. Svetlova, L. Solovjeva, V. Kulikova, K. Nerinovski, A. Yakimov, A. Nikiforov. The influence of modulation of intracellular NAD biosynthesis on the efficiency of DNA double-strand break repair in cultivated human cells after ionizing radiation exposure (RAP Conference Proceedings. 2021. Vol. 6, RAP21-279)
- FASEB SRC “NAD+ Metabolism & Signaling” (June 15 - 16, 2021, virtual
A. Nikiforov, V. Kulikova, A. Yakimov, K. Nerinovski, M. Svetlova, L. Solovjeva, J. Sudnitsyna, M. E. Migaud, S. Gambaryan, M. Ziegler, A. Kropotov. Purine nucleoside phosphorylase controls nicotinamide riboside metabolism in mammalian cells
- VII Pushchino School-Conference "Biochemistry, Physiology and Biosphere Role of Microorganisms", December 6-9, 2021
Vaulin N.S., Shiryaeva A.A., Severinov K.V. K320N substitution in the Cas3 helicase domain affects the choice of spacers during primed adaptation and the efficiency of interference in the CRISPR-Cas I-E Escherichia coli system
- VIII All-Russian Youth Scientific Forum "Open Science 2021", November 17-19, 2021, Gatchina
1. O. A. Kotovskaya, A. A. Kirillov, N. E. Morozova. Study of the effect of the amount of regulatory protein on the efficiency of protection of cells with the type II restriction-modification system Esp1396I
2. Kazalov M. A., Fedorova Ya. V. "Study of TnpB proteins of IS605 family transposons from Escherichia coli and Deinococcus radiodurans"
3. Vaulin N. S., Shiryaeva A. A., Severinov K. V. Study of the role of Cas3 helicase activity in primed adaptation in the CRISPR-Cas I-E system of Escherichia coli
- Physics for Life Sciences, Fourth International Conference with School of Young Scientists, October 11–14, 2021
Panfilov M.A., Arseniev A.N., Khodorkovsky M.A. Study of Streptolydigin Transcription Inhibition at the Single Molecule Level (Physics for Life Sciences, Fourth International Conference with a School of Young Scientists, October 11–14, 2021 — St. Petersburg: A.F. Ioffe Institute, 2021. — p. 172, 38 ill)
- III United Scientific Forum of Physiologists, Biochemists and Molecular Biologists, Sochi, Dagomys, October 3–8, 2021
1. A. V. Kropotov, V. A. Kulikova, L. V. Solovieva, M. P. Svetlova, A. P. Yakimov, K. B. Nerinovskiy, Yu. S. Sudnitsyna, S. P. Gambaryan, A. A. Nikiforov. Metabolism of nicotinamide riboside, a nucleoside form of vitamin B3, in human and animal cells (Proceedings of the III United Scientific Forum of Physiologists, Biochemists, and Molecular Biologists (Sochi, Dagomys, October 3–8, 2021). 2021. Vol. 2, Page 220)
2. Antipova M. V, Kulikova V. A, Svetlova M. P, Nerinovskiy K. B, Yakimov A. P, Nikiforov A. A. Efficiency of different NAD biosynthesis pathways in mouse embryonic stem cells E14 in pluripotent and differentiated states (Proceedings of the III United Scientific Forum of Physiologists, Biochemists and Molecular Biologists (Sochi, Dagomys, October 3–8, 2021). 2021. Vol. 2, p. 267)
- Russian Microbiological Congress, Pskov, 26 Sep. – 1 Oct. 2021
Antonova D. A., Nichiporenko A. S., Usatykh A. A., Yakunina M. V. Redistribution of DNA of the bacterium Pseudomonas aeruginosa in the cell during infection with bacteriophage phiKZ 3-rd
2020
- XXI Winter Youth School of PNPI on Biophysics and Molecular Biology. Abstracts of the Youth Conference, Gatchina, February 24-29, 2020
1. Kolchina N.V., Yakimov A.P., Petukhov M.G., DEVELOPMENT OF A NEW APPROACH TO CONSTRUCTING PROTEIN LIGANDS USING A MODIFIED MOLECULAR FRAGMENT METHOD
2. Yakimov A.P., Shabalin K.A., Nerinovskiy K.B., REFINEMENT OF T1 RELAXATION TIME VALUES IN NMR APPLICATIONS OF METABOLOMICS
3. Yakusheva A.V., Kroptov A.V., Nerinovskiy K.B., Yakimov A.P., Nikiforov A.A., Kulikova V.A., POTENTIAL ROLE OF HUMAN PYROPHOSPHATASE NUDT13 IN REGULATION OF THE MITOCHONDRIAL POOL NAD
4. Alekseev A.A., Serdakov M.D., Pobegalov G.E., Bakhlanova I.V., Baitin D.M., Khodorkovsky M.A., “Conformational transitions of the RecA filament of Deinococcus Radiodurans during ATP hydrolysis”
5. Belousova V.V., Kurdyumova I.V., Yakunina M.V., STATE OF BACTERIAL DNA DURING INFECTION OF CELLS WITH BACTERIOPHAGE φKZ
- International Symposium of Experts "Regenerative medicine and ageing", Dubai, UAE, Feb 1‐3, 2020
Petukhov M. Global view at structural motifs of short peptide binding to double-stranded DNA, an all-against-all analysis
- VII Youth School-Conference of the Irkutsk Scientific Center of the Russian Academy of Sciences, St. Petersburg, October 12-15, 2020
N.A. Rumyantseva, A.D. Vedyaikin, I.E. Vishnyakov, “New data on the regulation of division during the SOS response in Escherichia coli”
- International Conference PhysicA.SPb, St. Petersburg, October 19 - 23, 2020
N.A. Rumyantseva, A.D. Vedyaikin, I.E. Vishnyakov, M.A. Khodorkovsky, "Visualization of intracellular structures of bacteria using expansion microscopy"
- Genes & Cells XV
M.M. Orekhova, V.V. Belousova, N.E. Morozova, I.E. Vishnyakov, M.V. Yakunina; Regulation of Early Transcription in the Giant Bacteriophage phiKZ (Genes & Cells XV, No. 3, Supplement, 2020, p. 195)
- International Workshop Navigation and Motion Control, 16-20 September 2019, Ladoga Lake, Russian Federation
1. A.N. Sergeenko, O.N. Granichin and M.V. Yakunina, Hamiltonian path problem: the performance comparison deoxyribonucleic acid computing and the branch-and-bound method (Journal of Physics: Conference Series, Volume 1536)
2. Danilova, Y., Yakunina, M., Moiseenko, A., Belousova, V., Vishnyakov, I., & Sokolova, O, Electron Tomography Revealed Compact DNA in the Nucleus-like Compartment, Formed in the Bacterial Cell During Infection by the phiKZ Bacteriophage (Microscopy and Microanalysis, 1-4, doi:10.1017/S1431927620020127)
- 7th International C. difficile Symposium (virtual meeting), Bled, Slovenia, 30.09.2020 – 4.11.2020
Maikova A., Boudry P., Shiriaeva A., Vasileva A., Boutserin A., Medvedeva S., Semenova E., Severinov K and Soutourina O. New functional aspects of Clostridium difficile CRISPR-Cas system
- VII All-Russian Youth Scientific Forum with International Participation "Open Science 2020", November 18-20, 2020, Gatchina
Shabalina A.V., Vedyaikin A.D., Vishnyakov I.E. Localization of cytoskeleton-like proteins of Mycoplasma gallisepticum
2019
- International Conference "Bacterial cell division: Closing the gap", Sweden, Lund, 9-12.06.2019
A.D. Vedyaikin, E.V. Ponomareva, Ya.V. Egorova, A.V. Shabalina, I.E. Vishnyakov, "Does FtsZ protein participate in division process in Mollicutes?"
- XX Winter Youth School on Biophysics and Molecular Biology, Saint Petersburg, February 25 - March 02, 2019
1. Egorova Ya.V., Vedyaikin A.D., Khodorkovsky M.A., Vishnyakov I.E., "Study of biochemical properties of mycoplasma FtsZ protein"
2. Shabalina A.V., Vedyaikin A.D., Khodorkovsky M.A., Vishnyakov I.E., "Application of transposon mutagenesis for fluorescent labeling of Mycoplasma gallisepticum proteins"
3. Rezinyuk D.A., Morozova N.E., Shiryaeva A.A., Khodorkovsky M.A., Severinov K.V. Study of regulation of type II restriction-modification system Esp1396I
4. Znobishcheva E.A., Morozova N.E., Khodorkovsky M.A., Severinov K.V. Modification of the T7 bacteriophage genome in vivo
- 23rd International Pushchino School-Conference of Young Scientists "BIOLOGY - SCIENCE OF THE XXI CENTURY", Pushchino, April 15-19, 2019
1. Abramova M.V., Selkova P.A., Musharova O.S., Fedorova Ya.V., Severinov K.V., "STUDY OF THE CRISPR CAS9 SYSTEM FROM CLOSTRIDIUM CELLULOLYTICUM"
2. Scheglova N.V., Kolchina N.V., Vasilyeva A.A., Fedorova Ya.V., Petukhov M.G., Severinov K.V., "CREATION OF CRISPR ASCPF1 PROTEIN THAT RECOGNIZES ALTERNATIVE PAM SEQUENCES"
3. Frantsuzova I.V., Arseniev A.N., Pobegalov G.E., Fedorova Ya.V., Severinov K.V., "STUDY OF THE CRISPR CASY SYSTEM"
4. Kazalov M.A., Meshalkina D.A., Fedorova Ya.V., Severinov K.V., "USE OF CRISPR/CPF1 RNA-PROTEIN COMPLEXES TO CHANGE THE EUKARYOTES GENOME"
5. Znobishcheva E.A., Morozova N.E., Khodorkovsky M.A., Severinov K.V. Editing the T7 bacteriophage genome using CRISPR-Cas9
- CRISPR 2019, Quebec, Canada, June 17-20, 2019
I. Fedorova, G. Pogegalov, A. Arseniev, A. Vasilieva, P. Selkova, O. Musharova, I. Goryanin, D. Artamonova, T. Zubko, S. Shmakov, K. Severinov, Cas9 diversity: characterization of Type IIC PpCas9, CcCas9, DfCas9 and DsCas9 nucleases
- International Conference "EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life", Germany, Heidelberg, October 9-12, 2019
A.D. Vedyaikin, A.V. Shabalina, M.A. Khodorkovsky, I.E. Vishnyakov, "Analysis of localization patterns of some proteins in living cells of Mycoplasma gallisepticum"
- XLVIII scientific and practical conference "Week of Science SPbPU", St. Petersburg, November 18-25, 2019
N.A. Rumyantseva, A.D. Vedyaikin, I.E. Vishnyakov. "SulA is capable of blocking the division of Escherichia coli at low concentrations in the cell"
- Seeing is Believing. Imaging the Molecular Processes of Life, 9-12 October 2019, Heidelberg, Germany
Morozova N., Kirillov A., Rezinuk D., Polinovskaya V., Smirnov S., Khodorkovskii M., Severinov K., Stochastic variation of expression of type II restriction-modification system determines the outcome of bacteriophage infection
- All-Russian Conference with International Participation “Current Problems of Cell Biology and Cell Technologies”, St. Petersburg, 8–11.10.2019
1. A. V. Yakusheva, A. A. Nikiforov, V. A. Kulikova, Study of the role of human pyrophosphatase NUDT13 in the regulation of NAD levels in mitochondria
2. Alekseev A. A., Pobegalov G. E., Baitin D. M., Khodorkovsky M. A., "Mechanical properties of the inactive RecA filament on single-stranded DNA"
- International Conference Physics.SPb, St. Petersburg, October 22-24, 2019
1. Arseniev A. N., Pobegalov G. E., Severinov K. V., Khodorkovsky M. A., Study of the mechanisms of bacterial transcription inhibition at the level of single molecules using acoustic force spectroscopy
2. Alekseev A. A., Pobegalov G. E., Cherevatenko G. A., Baitin D. M., Khodorkovsky M. A., "Study of conformational transitions of the RecA filament on single-stranded DNA during ATP hydrolysis"
3. N. A. Rumyantseva, A. D. Vedyaikin, I. E. Vishnyakov, G. Yu. Fisunov, "Analysis of gene expression stochasticity in single Mycoplasma gallisepticum cells"
4. Znobishcheva E. A, Morozova N. E., Khodorkovsky M. A, Fluorescent labeling of bacteriophage T7 using CRISPR-Cas
5. Rezinyuk D. A., Morozova N. E., Khodorkovsky M. A, The role of protein C in the type II restriction-modification system
- 44th FEBS Congress, From Molecules to Living Systems, Krakow, Poland, 6‐11.07.2019
1. Kolchina N., Afanasyeva A., Linkova N., Khavinson V., Petukhov M. Investigation of dipeptides binding to double stranded DNA using molecular modeling and docking (FEBS Open Bio, 2019. - Vol. 9 (Supplement 1). - pp. 215)
2. A. Arseniev, G. Pobegalov, O. Musharova, I. Fedorova, M. Khodorkovskii, Manganesedependent Cas9 ortholog from Defluviimonas sp.
3. P. Selkova, M. Abramova, I. Goryanin, T. Zubko, J. Piskunova, I. Fedorova, M. Khodorkovskii, CRISPR Cas9 system from Clostridium cellulolyticum
4. A. Vasileva, O. Musharova, G. Pobegalov, D. Artamonova, I. Fedorova, M. Khodorkovskii, Pasteurella pneumotropica and Demequina sediminicola Cas9 orthologs characterization
- All-Russian Conference with International Participation "Current Problems of Cell Biology and Cell Technologies", 8-11.10.2019
1. Yakimov A.P., Baitin D.M., Petukhov M.G. Inhibition of DNA-binding proteins activity by alpha-helical peptides (Genes and cells. - Vol. 14. - pp. 72)
2. A.V. Yakusheva, A.A. Nikiforov, V.A. Kulikova, Study of the role of human pyrophosphatase NUDT13 in regulation of NAD levels in mitochondria (Genes and Cells, Vol. XIV, No. 3, 2019, p. 56)
2018
- VIII International School of Young Scientists on Molecular Genetics "GENETIC ORGANIZATION AND MOLECULAR MECHANISMS OF FUNCTIONING OF LIVING SYSTEMS", 19-23.11.2018
Orekhova M.M., Yakunina M.V., The mechanism of recognition of the promoter by nonvirion RNA polymerase of the bacteriophage phiKZ
- SPbPU Science Week, Saint Petersburg, 19-24.11.2018
1. Egorova Ya.V., Vedyaikin A.D., Khodorkovsky M.A., Vishnyakov I.E., Study of polymerization and GTPase activity of FtsZ protein
2. Shabalina A.V., Vedyaikin A.D., Khodorkovsky M.A., Vishnyakov I.E. Endogenous fluorescent labeling of mycoplasma proteins using transposon mutagenesis
3. A.A. Alekseev, G.A. Cherevatenko, G.E. Pobegalov, D.M. Baitin, M.A. Khodorkovsky, Effect of force on the dynamics of RecA-DNA filaments in the presence of ADP
- V International Conference “Postgenome’2018”, Kazan, Russia, 29.10-02.11.2018
Vedyaikin A.D., Vishnyakov I.E., Ponomareva E.V., Fisunov G.Yu. Analysis of gene expression in single Mycoplasma gallisepticum cells using fluorescence microscopy
- PhysicS.SPb/2018, Saint Petersburg, Russia, 23-25.10.2018
1. Smirnov S. V., Morozova N. E., Khodorkovsky M. A., Severinov K. V., Use of fluorescence microscopy in studying the effect of the concentration of proteins of the Esp1396I system on the degree of protection from bacteriophage
2. Vedyaikin A. D., Drobysheva A. V., Vishnyakov I. E., Khodorkovsky M. A., Localization microscopy of structures formed by the FtsZ protein in living cells of Mycoplasma gallisepticum
- 6th International C. difficile Symposium, Bled, Slovenia, 12–14.09.2018
Maikova A., Semenova E., Severinov K., Soutourina O., The CRISPR-Cas system of Clostridium difficile: function and regulation
- 8th International Meeting on Antimicrobial Peptides, Edinburgh, UK, 02-04.09.2018
Tatyana Zyubko, YuliaPiskunova, Svetlana Dubiley, Marina Serebryakova, Leah B. Bushin, Tatyana Artamonova, Mikhail Metelev, Mohammad R. Seyedsayamdost, and Konstantin Severinov, The novel lasso-peptide pseudomycoidin from Bacillus sp. synthesized in branched-cyclic form
- 35th European Peptide Symposium, Dublin, Ireland, 26-31.08.2018
Tatyana Zyubko, Yulia Piskunova, Svetlana Dubiley, Marina Serebryakova, Leah B. Bushin, Tatyana Artamonova, Mikhail Metelev, Mohammad R. Seyedsayamdost, and Konstantin Severinov, The novel lasso peptide pseudomycoidin can be matured in vivo with only one specific processing enzyme
- FEBS Congress, Prague, Czech Republic, 7-12.07.2017
1. Bakhmet, E; Nazarov, I; Vorobyeva, N; Artamonova, T; Khodorkovskii, M; Tomilin, A, Significance of poly(C)-binding proteins for pluripotent stem cells
2. Orekhova, M; Artamonova, T; Yakunina, M; Khodorkovskii, M, The unique mechanism of promoter binding by phiKZ phage non-virion RNA-polymerase
- CRISPR2018, Vilnius, Lithuania, 20-23.06.2018
Anna Shiriaeva, Ekaterina Savitskaya, Kirill Datsenko, Irina Vvedenskaya, Bryce Nickels, Ekaterina Semenova, Konstantin Severinov, In vivo detection of primed adaptation intermediates in Escherichia coli
- VI Youth Conference on Molecular and Cellular Biology of the Institute of Cytology of the Russian Academy of Sciences, 25–27.04.2018
1. S. V. Smirnov, N. E. Morozova, M. A. Khodorkovsky, K. V. Severinov, Effect of the Concentration Ratio of Type II Restriction-Modification System Proteins in E. coli Cells on the Efficiency of Protection from Bacteriophage
2. Polinovskaya V. S., Vedyaikin A. D., Drobysheva A. V., Ivanov V. A., Vishnyakov I. E., Search for Partner Proteins of the FtsZ Division Protein in Mycoplasma gallisepticum and Acholeplasma laidlawii Cells
- XXV Russian National Congress "Man and Medicine", Moscow, Russia, 09-12.04.2018
Kolchina N.V., Linkova N.S., Khavinson V.Kh., Petukhov M.G., Construction of short peptides for binding to double-stranded DNA in the classical B-form
- International Symposium of Experts: Effective current approaches in anti-aging medicine and gerontology, Stockholm, Sweden, 13-14.04.2018
Kolchina N., Linkova N., Petukhov M., Systematic search for structural motifs of short peptides binding to double-stranded DNA
- VI Youth Conference on Molecular and Cellular Biology, St. Petersburg, Russia, 25-27.04.218
Kulikova V. A., Kropotov A. V., Nerinovsky K. B., Yakimov A. P., Shabalin K. A., Svetlova M. P.,1 Solovyova L. V.,1 Nikiforov A. A., Mechanism of transport of nucleosides NR and NAR into human cells
- Winter Youth School of PNPI on Biophysics and Molecular Biology, St. Petersburg, Russia, 17-22.02.2018
Kulikova V.A., Solovyova L.V., Panchenko A.V., Shabalin K.A., Nerinovsky K.B., Yakimov A.P., Svetlova M.P., Khodorkovsky M.A., Nikiforov A.A., Analysis of the pharmacodynamic effects of various NAD precursors in mice using NMR spectroscopy
2017
- 2nd International Caparica Conference in Antibiotic Resistance, 12-15.06.2017
M. Metelev, D. Ghilarov, I. Utkina, D.Y. Travin, K. Severinov, Ribosomally encoded and posttranslationaly modified peptides with antibacterial activities and species specificity of their action
- SKOLTECH & MIT CONFERENCE “SHAPING THE FUTURE: BIG DATA, BIOMEDICINE AND FRONTIER TECHNOLOGIES”, Moscow, Russia, 25-26.04.2017
Fedorova I, Zetsche B, Severinov K, Zhang F, Cpf1: multiplex gene editing
- 29th RNA Polymerase Workshop, Newcastle University, UK, 6-7.04.2017
Maria Sokolova, A non-canonical multisubunit RNA polymerase encoded by the AR9 phage recognizes the template strand of its uracil-containing promoters
- 22nd Structural Biology Symposium, Sealy Center for Structural Biology and Molecular Biophysics Symposium, The University of Texas Medical Branch, USA, 06.05.2017
Maria Sokolova, Transcription Strategy of a Giant Bacteriophage AR9 and Characterization of Its Non-Canonical Multisubunit RNA Polymerase
- FASEB конференция “Механизм и Регуляция Транскрипции Прокариот”, Сакстонс Ривер, Вермонт, США, 25-30.06.2017
Maria Sokolova, Transcription Strategy of a Giant Bacteriophage AR9 and Characterization of Its Non-Canonical Multisubunit RNA Polymerase
- FASEB SRC “NAD Metabolism & Signaling”, New Orleans, USA, 09-14.07.2017
V. Kulikova, K. Shabalin, K. Nerinovski, M. Svetlova, L. Solovjeva, D. Firsanov, C. Dölle, M. Niere, M. R. VanLinden, M. Migaud, M. Ziegler, and A. Nikiforov, Cellular uptake and release of NAD precursors
- VII Russian Symposium "Proteins and Peptides", Moscow, Russia, 18-22.09.2017
Kolchina N.V., Afanasyeva A.S., Sall T.S., Linkova N.S., Petukhov M.G., Khavinson H.V., Analysis of interactions of dipeptides with double-stranded DNA
- Molecular Simulation Studies in Materials and Biological Sciences, Saint-Petersburg.Russia, 07-10.09.2017
Yakimov A., Pobegalov G., Bakhlanova I., Khodorkovskii M., Baitin D., Petukhov M., Design of stable α-helical peptides for biotechnology and medicine
- Future of Biomedicine 2017, Vladivostok, Russia, 11-14.09.2017
Yakimov A., Pobegalov G., Bakhlanova I., Khodorkovskii M., Petukhov M., Baitin D., Design of stable α-helical peptides for biotechnology and medicine
- FEBS Congress 2017, Jerusalem, Israel, 10-14.09.2017
1. M. Svetlova, L. Solovjeva, D. Firsanov, K. Shabalin, K. Nerinovski, V. Kulikova, M. Khodorkovskiy, P. Redpath, M. Migaud, M. Ziegler, and A. Nikiforov, The potential of various extracellular NAD precursors to maintain the synthesis of intracellular NAD in cultivated human cells
2. V. Kulikova, L. Onopa, M. Svetlova, L. Solovjeva, D. Firsanov, K. Shabalin, K. Nerinovski, P. Redpath, M. E. Migaud, M. Ziegler, and A. Nikiforov, Mechanism of nicotinamide riboside and nicotinic acid riboside import into human cells
3. Vishnyakov I., Vedyaykin A., Khodorkovskii M., Borchsenius S. The identification of a protein involved in formation of cytoskeleton-like structures in Mycoplasma gallisepticum cells
- Waksman Annual Retreat, Rutgers University, NJ, USA, 12.09.2017
Shiriaeva A., Savitskaya E., Semenova E., Datsenko K.A., Severinov K., RecBC influences CRISPR Adaptation in the Type I-E CRISPR-Cas System of Escherichia coli
- 4th International School and Conference «Saint-Petersburg OPEN 2017», Санкт-Петербург, Россия, 3-6 апреля 2017
E.V. Ponomareva, I.E. Vishnyakov, N.E. Morozova, V.S. Polinovskaya, M.A. Khodorkovskii, A.D. Vedyaykin, Super-resolution microscopy of living bacterial cells
- The Second Russian Conference with International Participation “Physics for Life Sciences”, St. Petersburg, Russia, 18–22.09.2017
A.D. Vedyaikin, V.S. Polinovskaya, I.E. Vishnyakov, M.A. Khodorkovsky. Subdiffraction microscopy of structures formed by FtsZ proteins of mycoplasmas
- International Youth Conference PhysicA.SPb 2017, Saint Petersburg, Russia, 24-26.10.2017
Polinovskaya V.S., Vedyaikin A.D., Vishnyakov I.E., Khodorkovsky M.A. Subdiffraction microscopy of mycoplasma cells
- National Congress of the French Society for Microbiology, Paris, France, 9-11.10.2017
A. Maikova, E. Semenova, K. Severinov, O. Soutourina, The CRISPR-Cas system of Clostridium difficile: function and regulation
- II International Conference "Drug Research: Simple and Complex Tasks", Yaroslavl, Russia, 19-20.10.2017
Biyanova D.A., Nikitina A.A., Grigoriev A.V., Sidorova A.A., Chromatographic mass spectrometric determination of atorvastatin in multicomponent dosage forms within the framework of clinical trials
- 45th International Symposium on High Performance Liquid Phase Separations and Related Techniques (HPLC 2017), Prague, Czech Republic, 17-22.06.2017
1. Iaroshenko D.V, Piven A.V., Grigoriev A.V., Sidorova A.A, LC-MS/MS method for simultaneous determination of fingolimod (FTY720) and fingolimod phosphate (FTY720-P) in human blood
2. Nikitina A.A., Grigoriev A.V., Sidorova A.A., The methods for determination of drug combinations in human plasma by LC-MS/MS
2016
- 21st Congress of the International Organization for Mycoplasmology, Brisbane, Australia, 03-07.07.2016
Innokentii E. Vishnyakov, Alexey D. Vedyaykin, Anton V. Sabantsev, Sergey N. Borchsenius, Localization microscopy of Mollicutes
- Systems Biology and Bioinformatics (SBBI’2016), St.-Petersburg, Russia, 30.06-02.07.2016
1. Afanasyeva A. S., Izmailov S. A., Petukhov M. G. AQUABRIDGE – a novel approach for molecular modelling of structural water in protein active sites
2. Yakimov A., Khodorkovskii M., Baitin D., Petukhov M. Improved version of SEQOPT, the method for de novo design of stable alpha-helices
3. Morozova N., Sabantsev A., Bogdanova E., Fedorova Y., Maykova A., Vedyaykin A., Khodorkovskiy M., Severinov K., Study of effect of gene expression variations on phage infection probability in E.coli cells with a type II restriction-modification system
- CRISPR-2016, , Rehovot, Israel, 23-25.05.2016
1. A. Shiriaeva, E. Savitskaya, K. Severinov, An interplay between DNA double-strand break repair and CRISPR-Cas machinery
2. O. Musharova, E. Savitskaya, K. Severinov, Investigation of DNA-binding specificity of Cas1-Cas2 CRISPR-adaptation complex in Escherichia coli
3. A. Strotskaia, E. Savitskaya, N. Morozva, E. Semenova, A. Metlytskaya, K. Severinov, Effects of targeting by Esherichia coli I-E CRISPR-Cas system on infection by different phages
- 11th International Conference on Protein Stabilisation (ProtStab2016), Istanbul, Turkey, 9-11.05.2016
Alexander Yakimov, Georgii Pobegalov, Irina Bakhlanova, Mikhail Khodorkovskii, Dmitrii Baitin, Michael Petukhov, «Inhibition of RecA Protein Activities By A Conformationally Stable Alpha-Helical Peptide With Optimized Sequence»
- 20th International Pushchino School-Conference “Biology – Science of the 21st Century”, Pushchino, Russia, 18-22.04.2016
1. Zhivkoplyas E.K., Artamonova T.O., Yakunina M.V., Severinov K.V., Two polymerases of one phage: study of the features of vRNAP phiKZ
2. Slascheva M.I., Sokolova M.L., Severinov K.V., Transcription strategy of bacteriophage ar9 encoding non-canonical multisubunit RNA polymerases
- School-conference with international participation "3rd International School and Conference Saint-Petersburg OPEN 2016", Saint-Petersburg, Russia, 28-30.03.2016
1. A Vedyaykin, A Sabantsev, I Vishnyakov, N Morozova, V, M Khodorkovskii, «3D super-resolution microscopy of bacterial division machinery»
2. G Pobegalov, A Alekseev, G Cherevatenko, M Khodorkovskii, D Baitin, «Single-molecule insights into dissociation of RecA filaments from duplex DNA by RecX»
- 50th Winter Youth School on Biophysics and Molecular Biology of the St. Petersburg Institute of Nuclear Physics NRC KI, Roshchino, Russia, 29.02-05.03.2016
1. Utkina I.L., Metelev M.V., T.O. Artamonova, D.A. Gilyarov, M.A. Khodorkovsky, K.V. Severinov, Identification of a new antibacterial thiazole-oxazole modified peptide from Klebsiella pneumoniae subsp. ozaenae
2. N.E. Morozova, A.V. Sabantsev, E.S. Bogdanova, Ya.V. Fedorova, A.S. Maikova, A.D. Vedyaikin, M.A. Khodorkovsky, K.V. Severinov, Study of the processes of appearance and accumulation of proteins of the restriction-modification system of type II Esp1396I after its introduction into a bacterial cell using fluorescence microscopy
3. E.K. Zhivkoplyas, T.O. Artamonova, M.V. Yakunina, Study of virion RNA polymerase of bacteriophage phiKZ
- 28th Winter Youth Scientific School "Promising Directions of Physical and Chemical Biology and Biotechnology", Moscow, Russia, 8-11.02.2016
I.L. Utkina, M.V. Metelev, T.O. Artamonova, D.A. Gilyarov, M.A. Khodorkovsky, K.V. Severinov, Characteristics of a new antibacterial thiazole-oxazole modified peptide from Klebsiella pneumoniae subsp. ozaenae
2015
- Phages 2015, , Oxford, UK, 1-2.09.2015
Lavysh D., Sokolova M., Severinov K, «Transcription strategy of bacteriophage AR9»
- Forum with international participation "SPbPU Science Week 2015", St. Petersburg, Russia, 30.11 - 5.12.2015
I.L. Utkina, M.V. Metelev, “Identification of a new antibacterial thiazole-oxazole modified peptide from K. Pneumoniae”
- II All-Russian Conference "Intracellular signaling, transport, cytoskeleton", St. Petersburg, Russia, 20-22.10.2015
1. V.A. Kulikova, K.A. Shabalin, A.P. Yakimov, K.B. Nerinovsky, M. Tsigler, A.A. Nikiforov, “NAD and its key metabolites: mechanisms of formation and interaction of intracellular and extracellular pools”
2. A.P. Yakimov, V.A. Kulikova, K.B. Nerinovsky, A.A. Nikiforov, K.A. Shabalin. “Development of a method for measuring the amount of extracellular NAD and its metabolites by NMR”
- EMBO|EMBL Symposium: New Approaches and Concepts in Microbiology, Heidelberg, Germany, 11-14.10.2015
Morozova N. «Study of a Type II Restriction-Modification system at the single-cell level using fluorescence microscopy»
- Future of Biomedicine 2015 Conference FEFU School of Biomedicine, Владивосток, Россия, 2-7.09.2015
Andrey L. Konevega «The ribosome: energetics of translocation and target of antibiotics»
- FASEB SRC «NAD Metabolism & Signaling», Timmendorfer Strand, Germany, 9-14.08.2015
Nikiforov A., Kulikova V., Shabalin K., Nerinovski K., Dölle C., Niere M., Yakimov A., Redpath P., Khodorkovskiy M., Migaud M., and Ziegler M. «Generation, release and uptake of the NAD precursor nicotinic acid riboside by human cells»
- Moscow Conference on Computational Molecular Biology – MCCMB’15, Москва, Россия, 16-19.07.2015
Savitskaya E., Semenova E, Vorontsova D., Medvedeva S., Logacheva M., Severinov K. «Autoimmune primed CRISPR adaptation in I-E and I-F systems: comparative analysis of new spacer selection mechanisms»
- 40th FEBS Congress, The Biochemical Basis of Life, Berlin, Germany, 4-9.07.2015
1. Chervyakova D.B., Lebedev D.V., Afanasyeva A.S., Khodorkovsky M.A., Isaev-Ivanov V.V., Petukhov M.G., «TIP49a protein forms active rod-like structures in solution»
2. Afanasyeva A., Grigoriev M., Petukhov M., «The structural basis of the TIP49a/b dodecamerization»
3. V. Kulikova, K. Shabalin, A. Yakimov, K. Nerinovski, A. Nikiforov, M. Ziegler, «Degradation of extracellular NAD and its metabolites in cultures of human cells»
4. D. Vinogradova, E. Maksimova, A. Paleskava, S. Kirillov, N. Soboleva, V. Makhno, V. Katunin, A. Konevega, «Molecular mechanism of decoding of tRNAs with extended anticodon»
5. Alexey Shvetsov, Pavel Kasatsky, Fedor Zatylkin, Marina Polyakova, Alfred Antson, Andrey Konevega. «Molecular mechanism of tRNA interactions with dihydrouridine synthases»
6. Maksimova E., KasatskyP., MakhnoV., Osterman I., Rodnina M.V., Dontsova O.A., Sergiev P.V., Konevega A.L., «Inhibition of translation elongation by antibiotic amicoumacin A»
- CRISPR Conference 2015, New York, USA, 18-20.06.2015
1. K. Severinov «Coupling of primed CRISPR adaptation with CRISPR interference»
2. E. Savitskaya «Deep CRISPR spacer profiling revealed E.coli spacer composition similarity between mammoth and contemporary animal microbiotas»
- 19th International Pushchino School-Conference of Young Scientists “Biology – Science of the 21st Century”, Pushchino, Russia, 20-24.04.2015
1. Kharchenko V.D., Nikiforov A.A., Kulikova V.A., “Study of the role of NUDT12 and NUDT13 proteins in the regulation of NAD levels in human cells”
2. F.A. Zatylkin, P.S. Kasatsky, A.L. Konevega. “The mechanism of interaction of dihydrouridine synthases with tRNA”
- XXII Russian National Congress "Man and Medicine", Moscow, Russia, 6-10.04.2015
Afanasyeva A.S., Grigoriev M.Yu., Petukhov M.G. "The influence of DNA on the dynamics of lytic water in DNA-dependent ATPases of the TIP49 family"
- 2nd International School and Conference on Optoelectronics, Photonics, Engeneering and Nanostructures, Санкт-Петербург, Россия, 6-8.04.2015
VV Gorbunov, AD Vedyaykin, IE Vishnyakov, GE Pobegalov, AS Melnikov, PYu Serdobintsedv, AV Sabantsev, «Dual color localization microscopy of FtsZ and DNA in Escherichia coli»
- Biophysical Society 59th Annual Meeting, Baltimore, Maryland, USA, 07-11.02.2015
Georgii Pobegalov, Alexandr Alekseev, Anton Sabantsev, Alexey Melnikov, Mikhail Khodorkovskiy, Dmitry Baitin «Real-Time RecA Filament Disassembly in the Presence of RecX Monitored using Single-Molecule Manipulation by Optical Tweezers»
2014
- International Conference "Science Week 2014", St. Petersburg, Russia, 1-6.12.2014
1. V.D. Kharchenko, A.A. Nikiforov, V.A. Livinskaya, “Creation of vectors for overexpression of NUDT12 and NUDT13 proteins in human and bacterial cells”
2. Alekseev A.A., Makulova A.A., Arseniev A.N., Baitin D.M., Khodorkovsky M.A., Pobegalov G.E. “Study of the dynamics of DNA length change at the single-molecule level using optical capture”
- XVII All-Russian Symposium "Structure and Functions of the Cell Nucleus", St. Petersburg, Russia, 28-30.10.2014
V.A.Livinskaya, K.A.Shabalin, K.B.Nerinovsky, M.A.Khodorkovsky, M.Ziegler, A.A.Nikiforov “Nicotinamide and nicotinic acid ribosides are key metabolites of the NAD biosynthesis pathways in human cells”
- 2nd International Workshop on Pontin/RUVBL1 & Reptin/RUVBL2, Oeiras, Portugal, 10-12.10.2014
1. G. Pobegalov, A. Alekseev, A. Sabantsev, M. Petukhov, M. Khodorkovskiy & M. Grigoriev «DNA binding by Pontin visualized at the single-molecule level using the Dendra2-Pontin fusion protein»
2. Arina Afanasyeva, Mikhail Grigoriev, Michael Petukhov «Double-stranded DNA affects dynamics of lytic water molecules in the catalytic sites of TIP49a/b hexamers»
- Bangalore Microscopy Course 2014, Bangalore, India, 21-28.09.2014
N E Morozova, Y V Fedorova, E S Bogdanova, A D Vedyaikin, N N Konstantinova, A V Sabantsev, M A Khodorkovskiy, K V Severinov, «An assay for the study of Type II restriction-modification system in E. coli at the single-cell level»
- The First International Scientific Conference "Science of the Future", St. Petersburg, Russia, 17-20.09.2014
Maria Yakunina, Leonid Minakhin, Tatyana Artamonova, Maria Sokolova, Mikhail Khodorkovskiy, Konstantin Severinov «Non-canonical multisubunit RNA polymerases encoded by the phiKZ phage»
- Extremophiles - 2014, Saint-Petersburg, Russia, 07-11.09.2014
1. Maria Yakunina, Anna Lopatina, Leonid Minakhin, Konstantin Severinov «A unique RNA polymerase encoded by Thermus phage P23-45»
2. Lopatina A., Kapustin M., Severinov K., «Variation of CRISPR types and spacers’ diversity in Thermus bacteria from distant hot springs»
- 20th EuroQSAR, Understanding Chemical - Biological Interactions, Санкт-Петербург, Россия, 1-4.09.2014
Arina Afanasyeva, Sergey Izmailov, Michael Petukhov, «The use of new molecular modelling method for investigation of structural water»
- FEBS EMBO 2014 Conference, Paris, France, 30.08-04.09.2014
1. Veronika Livinskaya, Konstantin Shabalin, Kirill Nerinovski, Christian Dölle, Marc Niere, Mikhail Khodorkovskiy, Mathias Ziegler, Andrey Nikiforov «Vitamin B3-derived ribosides are authentic intermediates of human NAD metabolism»
2. Andrey Nikiforov, Veronika Livinskaya, Konstantin Shabalin, Kirill Nerinovski, Christian Doelle, Marc Niere, Mikhail Khodorkovskiy, Mathias Ziegler «Generation, release and uptake of the NAD precursor nicotinic acid riboside by human cells»
- FEBS Young Scientists' Forum, Paris, France, 27-30.08.2014
Arina Afanasyeva, Mikhail Grigoriev, Michael Petukhov, «Mechanisms of DNA stretching in complexes with TIP49A/B proteins»
- Total Transcription - 2014, Cambridge, UK, 01-05.09.2014
1. Maria Yakunina, Leonid Minakhin, Tatyana Artamonova, Maria Sokolova, Mikhail Khodorkovskiy, Konstantin Severinov «Unusual multisubunit RNA polymerases encoded by the PhiKZ phage»
2. Maria Sokolova, Daria Lavysh, Maria Yakunina, Mikhail Khodorkovskiy, Konstantin Severinov «Unusual RNA polymerases encoded by the PBS1 phage»
- Mathematical Virology 2014, York, UK, 18-22.08.2014
Evgeny Klimuk, Konstantin Severinov «Characterization of novel transcription anti-activation mechanism through proteolytic cleavage of core RNA polymerase subunit in bacteriophage-infected Pseudomonas aeruginosa»
- Viruses of microbes: Structure and function, frommole cule to communities, Zurich, Switzerland, 14-18.07.2014
Lopatina, A., Kapustin, M., Severinov, K., «Diversity of CRISPR cassettes of Thermus from distant hot springs»
- Symposium: DNA Habitats and its RNA Inhabitants, Salzburg, Austria, 03-05.07.2014
Fedorova Y.V., Datsenko K.A., Savitskaya E., Sabantsev A.V., Morozova N.E., Semenova E., Severinov K. «CRISPR-Cas function at conditions of self-targeting»
- 22nd International Symposium Nanostructures: Physics and Technology, St. Petersburg, Russia, 23-27.06.2014
G. Pobegalov, A. Sabantsev, M. Grigoriev, M. Khodorkovskiy, invited talk "Single molecule studies of DNA-protein interactions"
- XVI International Congress on Antimicrobial Therapy, Moscow, Russia, 21-23.05.2014
K.V. Severinov, "Endolysins of bacteriophages: prospects for a new class of antimicrobial drugs"
- 3rd European CRISPR meeting «CRISPR 2014», Berlin, Germany, 14-16.05.2014
1. Semenova E., Datsenko K., Savitskaya E., Sabantsev A., Fedorova Y., Strotskaja A., Nenarokova A., Musharova O., Severinov K. «Use of auto-primed spacer acquisition to study CRISPR adaptation in Escherichia coli»
2. Savitskaya E., Shmakov S., Semenova E., Datsenko K., Severinov K. «Pervasive generation of oppositely-oriented spavers during CRISPR adaptation»
3. Semenova E., Datsenko K., Savitskaya E., Sabantsev A., Fedorova Y., Severinov K. «Autoprimed spacer aquisition in E.coli cells»
- XXI Russian National Congress "Man and Medicine" 2014, Moscow, Russia, 7-11.04.2014
A.S. Afanasyeva, M.G. Petukhov "A new method for searching for proteins capable of binding to identical ligands"
- III All-Russian Congress of Young Scientists, VKMU ITMO 2014, St. Petersburg, Russia, 8-11.04.2014
A.S. Afanasyeva, S.A. Izmailov, M.G. Petukhov "Study of molecular mechanisms of ligand hydration in human ATPases using molecular modeling and molecular dynamics methods"
- 1st International School and Conference on Optoelectronics, Photonics, Engineering and Nanostructures, St. Petersburg, Russia, 25-27.03.2014
1. A.A. Alekseev, A.N. Arseniev, A.V. Sabantsev, G.E. Pobegalov, A.S. Melnikov, M.A. Khodorkovskiy, постер «Dynamics of GelRed intercalation into double-stranded DNA at the singlemolecule level»
2. A.D. Vedyaykin, A.V. Sabantsev, I.E. Vishnyakov, Y.V. Fedorova, A.S. Melnikov, P.Yu. Serdobintsev, постер «Localization microscopy study of FtsZ structures in E. coli cells during SOSresponse»
3. G.E. Pobegalov, A.N. Arseniev, Y.V. Fedorova, M.L. Sokolova, M.G. Petukhov, E. Käs, M.A. Khodorkovskiy and M.Grigoriev, постер «Single-molecule studies of DNA-binding ATPase Pontin using optical tweezers»
2013
- International scientific and practical conference "XLII WEEK OF SCIENCE SPbSPU", St. Petersburg State Polytechnical University, St. Petersburg, Russia, 02-07.12.2013
Reception of out-of-town conference participants with the aim of demonstrating the capabilities of the center
- N.E. Morozova, A.D. Vedyaikin, A.V. Sabantsev, Ya.V. Fedorova, M.V. Yakunina, K.V. Severinov, report "Study of the mechanism of overcoming the restriction-modification system by bacteriophage"
K. Severinov, invited report "Adaptive immunity of bacteria"
- Russian Youth Conference on Physics and Astronomy "PHYSICS.SPB", A.F. Ioffe Physical-Technical Institute, Санкт-Петербург, Россия, 23-24.10.2013
Vedyaikin A.D., Morozova N.E., Sabantsev A.V., Pobegalov G.E., Arseniev A.N., report "Formation of tubular structures from human cell membranes using the "Laser Tweezers" installation"
- All-Russian Symposium on Cell Biology in Culture, Institute of Cytology RAS, St. Petersburg, Russia, 21-23.10.2013
1. V. A. Livinskaya, M. A. Khodorkovsky, M. Ziegler, A. A. Nikiforov, report "Study of the mechanisms of formation and interaction of intra- and extracellular pools of key NAD metabolites"
2. N. E. Morozova, A. D. Vedyaikin, G. E. Pobegalov, S. V. Murashov, A. S. Melnikov, M. A. Khodorkovsky, A. V. Sabantsev, poster "Formation of membrane tubular structures from HepG2 cells using an optical trap. All-Russian Symposium on Cell Biology in Culture"
- 5rd Bangalore microscopy course, National Centre for Biological Sciences, Bangalore, India, 8-15.09.2013
A. Arseniev
- EMBO Conference - Helicases and nucleic acid translocases, Robinson College, Cambridge, UK, 4-8.08.2013
G. Pobegalov, A. Sabantsev, A. Arseniev, Y. Fedorova, M. Sokolova, A. Melnikov, M. Petukhov, E. Käs, M. Khodorkovskiy and M. Grigoriev, постер «TIP49a/dsDNA transactions at the single-molecule level visualized in real time using optical tweezers»
- 2013 FASEB SRC «NAD Metabolism & Signaling», Itasca, USA, 14-19.07.2013
Nikiforov A., Livinskaya V., Dölle C., Niere M., Khodorkovskiy M. and Ziegler M., доклад «Nicotinamideriboside (NR) and nicotinic acid riboside (NAR) homeostasis in humans: potential mechanism of intracellular generation and release from cells»
- 38th FEBS Congress, Saint Petersburg, Russia, 6-11.07.2013
1. V. Livinskaya, A. Afanasyeva, C. Dölle, M. Niere, M. Khodorkovskiy, M. Ziegler and A. Nikiforov, постер «Potential role of cytosolic 5’-nucleotidases in human NAD metabolism»
2. M. Yakunina, D. Vorontsova, T. Artamonova, M. Khodorkovskiy, K. Severinov, L. Minakhin, постер «Two non-canonical RNA polymerases encoded by phiKZ-like giant phages»
3. A. Sabantsev, I. Vishnyakov, A. Vedyaykin, G. Pobegalov, S. Borchsenius, M. Khodorkovskiy, постер «Study of structures formed by FtsZ in Escherichia coli and Mycoplasma hominis cells»
4. G. Pobegalov, A. Arseniev, A. Sabantsev, Y. Fedorova, M. Sokolova, A. Melnikov, M. Petukhov, E. Käs, M. Grigoriev and M. Khodorkovskiy, постер «Single-molecule studies of dsDNA properties using optical tweezers»
5. M. Petukhov, A. Ilatovskiy, T. Artamonova, A. Afanasieva, A. Yakimov, M. Khodorkovskiy, E. Käs, M. Grigoriev, постер «Dynamics of the dsDNA/TIP49a hexameric complexes»
6. A. Afanasyeva, A. Hirtreiter, A. Schreiber, M. Sokolova, D. Grohmann, A. R. McKay, M. Khodorkovskiy, I. Tsaneva, M. Petukhov, F. Werner and M. Grigoriev, постер «Mechanism of ATP hydrolysis by the archeal TIP49 AAA+ protein»
7. D. Lebedev, M. Sokolova, J. Fedorova J., D. Chervyakova, S. Landa, M. Petukhov, M. Khodorkovskii, постер «Supramolecular structures formed by TIP49A protein in vitro»
8. A. Yakimov, G. Rychkov, M. Petukhov, постер «SeqOPT: web based server for rational design of conformationally stable alpha-helices in monomeric peptides and globular proteins»
9. A. Sitnikova, T. Starkova, T. Artamonova, V. Karpenko, A. Polyanichko, E. Chikhirzhina, E. Kostyleva, A. Tomilin, постер «Application of mass spectrometry to the characterization of post-translational modifications of chromosomal proteins»
- 5th International Symposium on Optical Tweezers in Life Sciences, Umspannwerk Ost, Berlin, Germany, 18.06.2013
A. Arseniev, G. Pobegalov, A. Sabantsev, Y. Fedorova, M. Sokolova, A. Melnikov, M. Petukhov, E. Käs, M. Grigoriev and M. Khodorkovskiy, доклад «DNA-protein interactions at the single-molecule level using optical tweezers»
- «Lasers. Measurements. Information-2013», SPbPU, Saint Petersburg, Russia, 04–06.06.2013
A.N. Arseniev, G.E. Pobegalov, A.V. Sabantsev, Ya.V. Fedorova, M.L. Sokolova, A.S. Melnikov, M.A. Khodorkovsky, report "Application of laser tweezers for overstretching DNA molecules in single-molecule studies"
- Youth Scientific Conference “Students and Young Scientists of Innovative Russia”, Saint Petersburg State Polytechnical University, Saint Petersburg, Russia, 23–24.05.2013
1. V.A. Livinskaya, A.A. Nikiforov, report "Human 5'-nucleotidases CN - II and CN - III dephosphorylate mononucleotides NMN and NAMN in vitro"
2. D.N. Vorontsova, M.V. Yakunina, M.A. Khodorkovsky, report "Presumptive virion RNA polymerase of bacteriophage phiKZ"
- III All-Russian scientific conference of students and postgraduates with international participation "YOUNG PHARMACY - POTENTIAL OF THE FUTURE", St. Petersburg State Chemical-Pharmaceutical Academy, St. Petersburg, Russia, 25-26.04.2013
M.V. Yakunina, D.N. Vorontsova, report "Development of infection of pathogenic bacteria Pseudomonas aeruginosa by bacteriophage phiKZ"
- 17th International Pushchino School-Conference of Young Scientists “BIOLOGY – SCIENCE OF THE 21ST CENTURY”, Pushchino Scientific Center of the Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 22–26.04.2013
A.V. Sabantsev, A.D. Vedyaikin, G.E. Pobegalov, M.A. Khodorkovsky, S.N. Borkhsenius, I.E. Vishnyakov, "Study of supramolecular protein structures formed in mycoplasma cells using localization microscopy"
2012
- International scientific and practical conference "XLI WEEK OF SCIENCE SPbSPU", Saint Petersburg State Polytechnical University, Saint Petersburg, Russia, 03-08.12.2012
Reception of out-of-town conference participants with the aim of demonstrating the capabilities of the center.
- International Conference of Young Scientists "Experimental and Theoretical Biophysics '12", Institute of Theoretical and Experimental Biophysics RAS, Pushchino (Moscow Region), Russia, 22-24.10.2012
1. A.S. Afanasyeva, E.D. Rudenko, A.V. Sabantsev, G.E. Pobegalov, A.V. Ilatovsky, M.G. Petukhov, “Study of DNA stretching mechanisms and DNA-TIP49 complexes using molecular modeling and molecular dynamics in a periodic water box”
2. A.N. Arseniev, G.E. Pobegalov, A.V. Sabantsev, Ya.V. Fedorova, M.L. Sokolova, A.S. Melnikov, M.A. Khodorkovsky, “Application of optical traps for single-molecule studies of DNA interactions with proteins and various agents”
- First International Workshop on Pontin (RUVBL1) and Reptin (RUVBL2), European Institute for Chemistry and Biology, Bordeaux, France, 17–19.10.2012
1. G. Pobegalov, A. Sabantsev, A. Arsenyev, Y. Fedorova, M. Sokolova, A. Melnikov, M. Petukhov, E. Käs, M. Grigoriev, M. Khodorkovskiy, постерный доклад «Pontin and Reptin: DNA-protein interactions at the single-molecule level using optical tweezers»
2. A. Sabantsev, G. Pobegalov, A. Arsenyev, A. Melnikov, M. Khodorkovskii, постерный доклад «Three-dimensional cross-correlation tracking of DIC bead images for optical trapping»
3. A. Ilatovskiy, A. Afanasieva, A. Yakimov, M. Khodorkovskiy, E. Käs, M. Grigoriev, M. Petukhov, постерный доклад «dsDNA docking in the central channel of the TIP49a hexamer ring structure: conformational flexibility studies using molecular dynamics simulations»
4. M. Petukhov, A.Dagkessamanskaja, M. Bommer, B. Barrett, I. Tsaneva, A. Yakimov, R. Queval, A. Shvetsov, M. Khodorkovskiy, E. Käs, M. Grigoriev,устный доклад «Large-Scale Conformational Flexibility Determines the Properties of AAA+ TIP49 ATPases»
- «22nd International Conference «Lasers. Measurements. Information», Saint Petersburg State Polytechnical University, Saint Petersburg, Russia, 05–07.06.2012
G.E. Pobegalov, A.V. Sabantsev, Ya.V. Fedorova, M.L. Sokolova, A.S. Melnikov, M.A. Khodorkovsky, report "Single-molecule studies of DNA-protein interactions using the optical trap method"
- All-Russian Scientific and Methodological Conference "Fundamental Research and Innovation in National Research Universities", Saint Petersburg State Polytechnical University, Saint Petersburg, Russia, 17-18.05.2012
Khodorkovsky M.A., Plenary report "Fundamental research of biological systems conducted at the Research Institute "NanoBio" ONTI SPbSPU"
2011
International scientific and practical conference "XL WEEK OF SCIENCE SPbSPU", Saint Petersburg State Polytechnical University, Saint Petersburg, Russia, 05-10.12.2011
1. Reception of out-of-town conference participants with the purpose of demonstrating the capabilities of the center.
2. Afanasyev P.V., Sabantsev A.V., Khodorkovsky M.A., Dagkessamanskaya A.R., Lane D., Grigoriev M.Yu., report "Development of a methodology for studying DNA-binding proteins at the single-molecule level using a magnetic trap"
- 3rd Bangalore microscopy course, National Centre for Biological Sciences, Bangalore, India, 18–25.09.2011
A.V. Sabantsev, «Single-molecule localization microscopy on optical trapping set-up»
- All-Russian scientific conference of students and postgraduates with international participation "Young Pharmacy - Potential of the Future", St. Petersburg State Chemical-Pharmaceutical Academy, St. Petersburg, Russia, 20-21.04.2011
P.V. Afanasyev, A.V. Sabantsev, A.R. Dagkessamanskaya, D. Lane, M.Yu. Grigoriev, M.A. Khodorkovsky, report "Development of a magnetic trap for studying proteins SopB, TIP49a, TIP49b"