Публикации

2024

1. Dependence of post-segregational killing mediated by Type II restriction–modification systems on the lifetime of restriction endonuclease effective activity
   Kozlova S, Morozova N, Ispolatov Y, Severinov K.
   mBio 0:e01408-24
2. A virally-encoded tRNA neutralizes the PARIS antiviral defence system
   Burman, N., Belukhina, S., Depardieu F.
   Nature (2024)
3. Assembly of phiKZ bacteriophage Inner Body during infection
   Nichiporenko A., Antonova D., Kurdyumova I., Khodorkovskii M., Yakunina M.V.
   Biochem Biophys Res Commun. 2024. 693:149372 
4. SulA does not sequester FtsZ in Escherichia coli cells during the SOS response
   Rumyantseva N.A., Golofeeva D.M., Vedyaykin A.D.
   Biochemical and Biophysical Research Communications, 2024. 691: p. 149313. (Q1)
5. Direct evidence of the ability of Pseudomonas aeruginosa and E. coli SulA to dimerize
   Rumyantseva N.A., Golofeeva D.M., Shabalina A.V., Vedyaykin A.D.
   Archives of Biochemistry and Biophysics, 2024. 751: p. 109826. (Q1)
6. Анализ белка Cas1_3 асгардархей: экспериментальная характеристика потенциального промежуточного звена в эволюции CRISPR-Cas систем
   М.В. Абрамова, А.С. Малых, М.А. Казалов, Я.М. Гатиева, П.А. Селькова, А.П. Якимова, А.А. Васильева, А.Н. Арсениев, М.А. Ходорковский
   Научно-технические ведомости СПбГПУ. Физико-математические науки, 2024, принята в печать
7. OCT4 Expression in Gliomas Is Dependent on Cell Metabolism
   Volnitskiy A, Shabalin K, Pantina R, Varfolomeeva E, Kovalev R, Burdakov V, Emelianova S, Garaeva L, Yakimov A, Sogoyan M, Filatov M, Konevega AL, Shtam T.
   Current Issues in Molecular Biology, 2024 Jan 25;46(2):1107-1120. doi: 10.3390/cimb46020070
8. Гомологи тубулина бактерий и архей
   Румянцева Н.А., Голофеева Д.М., Хасанова А.А., Ведяйкин А.Д.
   Микробиология, 2024, принята в печать
9. Organization and Role of Bacterial SMC, MukBEF, MksBEF, Wadjet, and RecN Complexes
   Morozova, N.E., Potysyeva, A.S. & Vedyaykin, A.D.
   Cell Tiss. Biol. 18, 115–127 (2024)
10. tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector
    Ishita Jain; Matvey Kolesnik; Konstantin Kuznedelov; Leonid Minakhin; Natalia Morozova; Anna Shiriaeva; Alexandr Kirillov; Sofia Medvedeva; Alexei Livenskyi; Laura Kazieva; Kira Makarova; Evgene Koonin; Sergei Borukhov; Konstantin Severinov; Ekaterina Semenova
    Sci. Adv.10,eadl0164(2024)
11. Features of the DNA Escherichia coli RecN interaction revealed by fluorescence microscopy and single-molecule methods
    Viktoria D. Roshektaeva, Aleksandr A. Alekseev, Alexey D. Vedyaykin, Viktor A. Vinnik, Dmitrii M. Baitin, Irina V. Bakhlanova, Georgii E. Pobegalov, Mikhail A. Khodorkovskii, Natalia E. Morozova
    Biochemical and Biophysical Research Communications, Volume 716, 2024, 150009

2023

1. Clostridioides difficile CRISPR-Cas system regulation under biofilm conditions and at high glucose concentration
   Anna Maikova; Marina Abramova; Maria Yakunina
   Biochemical and Biophysical Research Communications, принятовпечатьянварь 2023, Manuscript No.: BBRC-23-17
2. Strain Streptomyces sp. P-56 Produces Nonactin and Possesses Insecticidal, Acaricidal, Antimicrobial and Plant Growth-Promoting Traits
   Irina Boykova, Oleg Yuzikhin, Irina Novikova, Pavel Ulianich, Igor Eliseev, Alexander Shaposhnikov, Alexander Yakimov and Andrey Belimov
   Microorganisms 2023, 11, 764, DOI: 10.3390/microorganisms11030764 
3. Type II CRISPR-Cas System Nucleases: A Pipeline for Prediction and In Vitro Characterization
   Vasileva AA, Aliukas SA, Selkova PA, Arseniev AN, Chernova VE, Musharova OS, Klimuk EI, Khodorkovskii MA, Severinov KV
   Mol Biol (Mosk) 2023 , 57(3):546-560
   English version: Molecular Biology, 2023, 57(3), страницы 550–562
4. Helical Reconstruction of the Giant Bacteriophage AR9 tail at Subnanometer Resolution
   Sirotkin, Ilia & Moiseenko, Andrey & Antonova, Daria & Yakunina, Maria & Wang, Fuxing & Liu, Zheng & Sokolova, Olga
   Microscopy and Microanalysis, 2023, 29, 934-935, 10.1093/micmic/ozad067.464
5. Organometallic Ir(III) complexes: post-synthetic modification, photophysical properties and binuclear complex construction
   Gitlina AY, Khistiaeva V, Melnikov A, Ivonina M, Sizov V, Spiridonova D, Makarova A, Vyalikh D, Grachova E.
   Dalton Trans. 2023, 52(26):8986-8997. doi: 10.1039/d3dt00901g
6. Structural Characteristics of High-Mobility Group Proteins HMGB1 and HMGB2 and Their Interaction with DNA
   Starkova TY, Polyanichko AM, Artamonova TO, Tsimokha AS, Tomilin AN, Chikhirzhina EV
   Int J Mol Sci. 2023, 24(4):3577. doi: 10.3390/ijms24043577
7. Characterization of CoCas9 nuclease from Capnocytophaga ochracea
   A Vasileva, P Selkova, A Arseniev, M Abramova, N Shcheglova, O Musharova, I Mizgirev, T Artamonova, M Khodorkovskii, K Severinov, I Fedorova
   RNA Biology, 2023, 20(1): 750-759, doi: 10.1080/15476286.2023.2256578
8. The Dynamics of Synthesis and Localization of Jumbo Phage RNA Polymerases inside Infected Cells
   Daria Antonova, Viktoriia V. Belousova,  Erik Zhivkoplyas, Mariia Sobinina, Tatyana Artamonova, Innokentii E. Vishnyakov, Inna Kurdyumova, Anatoly Arseniev, Natalia Morozova, Konstantin Severinov, Mikhail Khodorkovskii, Maria V. Yakunina
   Viruses, 2023, 15(10), 2096, doi: https://doi.org/10.1101/2023.09.14.557509
9. Two-Photon Excited Fluorescence of NADH-Alcohol Dehydrogenase Complex in a Mixture with Bacterial Enzymes
   Ioanna A. Gorbunova, Maxim E. Sasin, Dmitry V. Yachkov, Denis A. Volkov, Alexei D. Vedyaykin, Andrey A. Nikiforov and Oleg S. Vasyutinskii
   Biomolecules 2023, 13(2), 256; https://doi.org/10.3390/biom13020256
10. X/Y platinum(ii) complexes: some features of supramolecular assembly via halogen bonding†‡
    Anastasia Yu. Gitlina, Stanislav Petrovskii, Maksim Luginin, Alexey Melnikov, Elena Rychagova, Sergey Ketkov and Elena Grachova
    Dalton Transactions, 2023, 43, DOI: https://doi.org/10.1039/D3DT02970K

11.       Genomic Transfer via Membrane Vesicle: A Strategy of Giant Phage phiKZ for Early Infection
            Antonova D., Nichiporenko A., Sobinina M., Vishnyakov I. E., Moiseenko A., Kurdyumova I., Khodorkovskii M., Sokolova O.S., Yakunina M.V.
            bioRxiv. 2023. 573766

12.       Catalytically inactive dKbCas12d guided by sgRNA and new insights into its binding through a single-molecule approach
            Aleksandr Alekseev, Valerii Klimko, Marina Abramova, Irina Franzusova, Victor Vinnik, Aleksandra Vasilieva, Polina Selkova, Mikhail Khodorkovskii,           Anatolii Arseniev
            bioRxiv, 2023, doi: 10.1101/2023.12.12.571249

13.       Characterization of Streptococcus uberis Cas9 (SuCas9) - a Type II-A Ortholog Functional in Human Cells
            Polina Selkova, Aleksandra Vasileva, Anatolii Arseniev, Marina Abramova, Olga Musharova, Polina Malysheva, Mikhail Khodorkovskii and Konstantin      Severinov
            bioRxiv, 2023, doi: 10.1101/2023.12.11.571105

14.       Особенности структуры и функций бактериальных комплексов SMC
            Морозова Н.Е., Потысьева А.С., Ведяйкин А.Д.
            Цитология. 2023. Т. 65, № 6 С. 522-534. DOI: S004137712306007X.

15.       Визуализация одиночных клеток Escherichia coli в состоянии SOS-ответа при помощи экспансионной микроскопии
            Румянцева Н.А., Голофеева Д.М., Вишняков И.Е., Ведяйкин А.Д.
            Цитология. 2023. Т. 65. № 3. С. 303-310. DOI: 10.31857/S0041377123030070

16.       Characteristics of Genetic Polymorphisms Associated with Neurophysiological Processes and Analysis of Their Frequency Distributions in         the       Russian Population
            Kutelev, G.G., Malyshkin, S.S., Krivoruchko, A.B. et al.
            Neurosci Behav Physi 53, 164–169 (2023). https://doi.org/10.1007/s11055-023-01403-x

17.       The Impact of Stimulation and Suppression of NAD+ Biosynthesis on the Maintenance of Pluripotency of Mouse Embryonic Stem Cells
            Antipova M, Kulikova V, Solovjeva L, Kropotov A, Svetlova M, Yakimov A, Nerinovski K, Bakhmet E, Nikiforov A.
            Cell and Tissue Biology. 2023 October; 17:522–530. doi: 10.1134/S1990519X23050024

2022

1. SINGLE MOLECULES CHARACTERIZATION OF TRANSCRIPTION OF BACTERIAL RNA POLYMERASE PARAMETERS USING ACOUSTIC FORCE SPECTROSCOPY
   Arseniev A.N.; Panfilov M.A.; Pobegalov G.E.; Potyseva A.S.; Pavlinova P.A.; Yakunina M.V.; Khodorkovskii M.A.
   St. Petersburg State Polytechnical University Journal: Physics and Mathematics, 2022, V. 15, Is. 1, pp. 70-80, DOI: 10.18721/JPM.15107

1. A new insight into RecA filament regulation by RecX from the analysis of conformation-specific interactions
   Alekseev A.; Pobegalov G.; Morozova N.; Vedyaykin A.; Cherevatenko G.; Yakimov A.; Baitin D.; Khodorkovskii M.
   eLife, 2022, V. 11, e78409, DOI: 10.7554/eLife.78409
2. Single-molecule characterization of compressed RecA nucleoprotein filaments
   Alekseev A.; Morozova N.; Vedyaykin A.; Yakimov A.; Khodorkovskii M.; Pobegalov G.
   Biochemical and Biophysical Research Communications, 2022, V. 614, pp. 29-33, DOI: 10.1016/j.bbrc.2022.04.130
3. CHARACTERIZATION OF FLUORESCENT PROTEINS FOR STUDYING THE MORPHOLOGICAL REARRANGEMENTS INSIDE SINGLE BACTERIAL CELLS DURING INFECTION WITH phiKZ BACTERIOPHAGE
   Antonova D.A.; Zotova A.D.; Usatykh A.A.; Morozova N.E.; Yakunina M.V.
   St. Petersburg State Polytechnical University Journal: Physics and Mathematics, V. 15, Is. 2, pp. 46-55, DOI: 10.18721/JPM.15205
4. Persistence of plasmids targeted by CRISPR interference in bacterial populations
   Mamontov Viktor; Martynov Alexander; Morozova Natalia; Bukatin Anton; Staroverov Dmitry; Lukyanov Konstantin, Ispolatov Yaroslav; Semenova Ekaterina; Severinov Konstantin
   Proceedings of the National Academy of Sciences of the United States of AmericaТо, V. 119, Is. 15, e2114905119, DOI: 10.1073/pnas.2114905119
5. The division protein FtsZ interacts with the small heat shock protein IbpA in Acholeplasma laidlawii
   Chernova L.S., Vedyaykin A.D., Bogachev M.I., Fedorova M.S., Ivanov V.A., Vishnyakov I.E. and Kayumov A.R. (equal contribution)
   BBA – General Subjects. 2022, Volume 1866, Issue 12, December 2022, 130220, https://doi.org/10.1016/j.bbagen.2022.130220
6. Protealysin Targets the Bacterial Housekeeping Proteins FtsZ and RecA
   Tsaplina, Olga, Khaitlina, Sofia; Chukhontseva, Ksenia; Karaseva, Maria; Demidyuk, Ilya; Bakhlanova, Irina; Baitin, Dmitry; Artamonova, Tatiana; Vedyaykin, Alexey; Khodorkovskii, Mikhail; Vishnyakov, Innokentii
   International Journal of Molecular Sciences, 2022, Том 23, Выпуск 18, Номер статьи 10787, DOI: 10.3390/ijms231810787
7. Energy Transfer Processes in the Excited States of an {[Ir(N C)2(N N)]+-Rhodamine} Dyad: An Experimental and Theoretical Study
   Kitchenkov, Ilya S.; Melnikov, Alexei S.; Serdobintsev, Pavel S.; Khodorkovskii, Mikhail A.; Pavlovskii, Vladimir V.; Porsev, Vitaly V., Tunik, Sergey P.
   ChemPhotoChem, 2022, DOI: 10.1002/cptc.202200048
8. Spatiotemporally controlled generation of NTPs for single-molecule studies
   Sabantsev, Anton; Mao, Guanzhong; Aguirre River, Javiera; Panfilov, Mikhail; Arseniev, Anatolii; Ho, Oanha; Khodorkovskiy, Mikhail; Deindl, Sebastian
   Nature Chemical Biology, 2022, Том 18, Выпуск 10, Страницы 1144 - 1151
9. Purine nucleoside phosphorylase controls nicotinamide riboside metabolism in mammalian cellsAndrey Kropotov, Veronika Kulikova, Ljudmila Solovjeva, Alexander Yakimov, Kirill Nerinovski, Maria Svetlova, Julia Sudnitsyna, Alena Plusnina, Maria Antipova, Mikhail Khodorkovskiy, Marie E Migaud, Stepan Gambaryan, Mathias Ziegler, Andrey Nikiforov
   Journal of Biological Chemistry, 2022, 298(12), 102615
10. Cells with stochastically increased methyltransferase to restriction endonuclease ratio provide an entry for bacteriophage into protected cell population
    Alexander Kirillov, Natalia Morozova, Svetlana Kozlova, Vasilisa Polinovskaya, Sergey Smirnov, Mikhail Khodorkovskii, Lanying Zeng, Yaroslav Ispolatov, Konstantin Severinov
    Nucleic Acids Research, Volume 50, Issue 21, 28 November 2022, Pages 12355–12368, https://doi.org/10.1093/nar/gkac1124
11. Editing of Phage Genomes—Recombineering-assisted SpCas9 Modification of Model Coliphages T7, T5, and T3
    A Isaev, A Andriianov, E Znobishcheva, E Zorin, N Morozova, K Severinov
    Molecular Biology, 2022, 56(6), pp. 801–815, doi: 10.31857/S002689842206009X
12. The Tail Wags the Dog: The Far Periphery of the Coordination Environment Manipulates the Photophysical Properties of Heteroleptic Cu(I) Complexes
    Aleksandra Paderina, Alexey Melnikov, Sofia Slavova, Vladimir Sizov, Vladislav Gurzhiy, Stanislav Petrovskii, Maksim Luginin, Oleg Levin, Igor Koshevoy, Elena Grachova
    Molecules, 2022, 27(7), 2250, DOI: 10.3390/molecules27072250

2021

1. Разработка методики идентификации полиморфизма rs6265 в гене нейротрофического фактора мозга человека
   Кутелев Г.Г., Криворучко А.Б., Трандина А.Е., Морозова Н.Е., Черкашин Д.В., Иванов А.М., Овчинников Д.В., Глушаков Р.И.
   Вестник Российской военно-медицинской академии. 2021. Т. 23, No 4. С. 63–70. DOI: https://doi.org/10.17816/brmma80926
2. Structure and function of virion RNA polymerase of a crAss-like phage
   Drobysheva, A.V., Panafidina, S.A., Kolesnik, M.V., Klimuk, E.I., Minakhin, L., Yakunina, M.V., Borukhov, S., Nilsson, E., Holmfeldt, K., Yutin, N., Makarova, K.S., Koonin, E.V., Severinov, K.V., Leiman, P.G., Sokolova, M.L.
   Nature, 2021, Volume 589, Issue 7841, Pages 306-309
3. Equilibrative nucleoside transporters mediate the import of nicotinamide riboside and nicotinic acid riboside into human cells, International Journal of Molecular Sciences
   Kropotov, A., Kulikova, V., Nerinovski, K., Yakimov, A., Svetlova, M.a, Solovjeva, L.a, Sudnitsyna, J., Migaud, M.E., Khodorkovskiy, M., Ziegler, M., Nikiforov, A.
   Volume 22, Issue 3, 2 February 2021, Номерстатьи 1391, Pages 1-13
4. Prespacers formed during primed adaptation associate with the Cas1–Cas2 adaptation complex and the Cas3 interference nuclease–helicase
   Musharova, O., Medvedeva, S., Klimuk, E., Guzman, N.M., Titova, D., Zgoda, V., Shiriaeva, A., Semenova, E., Severinov, K., and Savitskaya, E.
   Proc Natl Acad Sci USA, 2021, 118, e2021291118
5. PpCas9 from Pasteurella pneumotropica- A compact Type II-C Cas9 ortholog active in human cells
   Fedorova I., Vasileva A., Selkova P., Abramova M., Arseniev A., Pobegalov G., Kazalov M., Musharova O., Goryanin I., Artamonova D., Zyubko T., Shmakov S., Artamonova T., Khodorkovskii M., Severinov K,
   Nucleic Acids Research, 2021, V. 48, Is. 21, pp. 12297-123092
6. Structure of the bacteriophage PhiKZ non-virion RNA polymerase
   Deymartín Garrido N., Orekhova M., Lai Wan Loong Y.T.E., Litvinova A., Ramlaul K., Artamonova T., Melnikov A.S., Serdobintsev P., Aylett C.H.S., Yakunina M.
   Nucleic Acids Research, 2021, V. 49, Is. 13, pp 7732-773921
7. Diversifying the luminescence of phenanthro-diimine ligands in zinc complexes, Inorganic Chemistry Frontiers
   Temerova D., Kisel K.S., Eskelinen T., Melnikov A.S., Kinnunen N., Hirva P., Shakirova J., Tunik S.P., Grachova E.V., Koshevoy I.O.
   Inorganic Chemistry Frontiers, 2021, V. 8, Is. 10, pp. 2549-256021
8. Protospacer-Adjacent Motif Specificity during Clostridioides difficile Type I-B CRISPR-Cas Interference and Adaptation
   Maikova, A., Boudry, P., Shiriaeva, A., Vasileva, A., Boutserin, A., Medvedeva, S., et al.
   mBio, 2021, 12, e02136-21. doi:10.1128/mBio.02136-21
9. A brownian ratchet model for dna loop extrusion by the cohesin complex
   Higashi, T.L., Pobegalov, G., Tang, M., Molodtsov, M.I., Uhlmann, F.
   eLife, 2021, 10, e67530
10. Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
    Kolesnik, M.V., Fedorova, I., Karneyeva, K.A., Artamonova, D.N., Severinov, K.V.,
    Biochemistry (Moscow), 2021, 86(10), стр. 1301–1314
11. Targeting evolution of antibiotic resistance by SOS response inhibition
    Yakimov, A., Bakhlanova, I., Baitin, D.
    Computational and Structural Biotechnology Journal, 2021, 19, стр. 777–783
12. Single–molecule insights into E. coli RNA polymerase inhibition by Streptolydigin
    Anatolii Arseniev, Mikhail Panfilov , Georgii Pobegalov, Alina Potyseva, Polina Pavlinova, Maria Yakunina, Sergei Borukhov
    Konstantin Severinov and Mikhail Khodorkovskii, 2021, BBRC under reiview
13. Purine nucleoside phosphorylase controls nicotinamide riboside metabolism in mammalian cells
    Veronika Kulikova; Ljudmila Solovjeva; Alexander Yakimov; Kirill Nerinovski; Maria Svetlova; Julia Sudnitsyna; Alena Plusnina; Maria Antipova; Mikhail Khodorkovskiy; Marie E. Migaud; Stepan Gambaryan; Mathias Ziegler, Andrey Nikiforov
    Molecular Metabolism, 2021, under review

2020

1. SulA is able to block cell division in Escherichia coli by a mechanism different from sequestration
   Vedyaykin, A., Rumyantseva, N., Khodorkovskii, M., Vishnyakov, I.
   Biochemical and Biophysical Research Communications, 2020, Volume 525, Issue 4, Pages 948-953
2. DNA targeting by Clostridium cellulolyticum CRISPR-Cas9 Type II-C system
   Fedorova, I.,  Arseniev, A., Selkova, P., Pobegalov, G., Goryanin, I., Vasileva, A., Musharova, O., Abramova, M., Kazalov, M., Zyubko, T., Artamonova, T., Artamonova, D., Shmakov, S., Khodorkovskii, M., Severinov, K.
   Nucleic Acids Research, 2020, Volume 48, Issue 4, Pages 2026-2034
3. Position of Deltaproteobacteria Cas12e nuclease cleavage sites depends on spacer length of guide RNA
   Selkova, P., Vasileva, A., Pobegalov, G., Musharova, O., Arseniev, A., Kazalov, M., Zyubko, T., Shcheglova, N., Artamonova, T., Khodorkovskii, M., Severinov, K., Fedorova, I.
   RNA Biology, 2020, 17(10):1472-1479. 
4. Binuclear Gold(I) Phosphine Alkynyl Complexes Templated on a Flexible Cyclic Phosphine Ligand: Synthesis and Some Features of Solid-State Luminescence
   Strelnik, I.D., Sizov, V.V., Gurzhiy, V.V., Melnikov, A.S., Kolesnikov, I.E., Musina, E.I., Karasik, A.A., Grachova, E.V.
   Inorganic Chemistry, 2020, Volume 59, Issue 1, Pages 244-253
5. Hamiltonian path problem solution using DNA computing
   Sergeenko, A., Yakunina, M., Granichin, O.
   Cybernetics and Physics, 2020, Volume 9, Issue 1, Pages 69-74
6. Исследование структурной организации активного центра немодифицированной рекомбинантной сульфатазы из мицелиального гриба Fusarium proliferatum LE1
   Колчина Н.В., Рычков Г.Н., Кульминская А.А., Ибатуллин Ф.М., Петухов М.Г., Бобров К.С.
   Биоорганическая химия. - 2020.-Том. 46.-С. 425-434
   
   Structural Organization of the Active Center of Unmodified Recombinant Sulfatase from the Mycelial Fungi Fusarium Proliferatum LE1
   Kolchina N.V., Rychkov G.N., Kulminskaya A.A., Ibatullin F.M., Petukhov M.G., Bobrov K.S.
   Russian Journal of Bioorganic Chemistry. - 2020. - Vol.46. - P.563–571.
7. N-and C-terminal regions of the small heat shock protein IbpA from Acholeplasma laidlawii competitively govern its oligomerization pattern and chaperone-like activity
   Chernova L.S., Bogachev M.I., Chasov V.V., Vishnyakov I.E. and Kayumov A.R. (equal contribution)
   RSC Advances, 2020, 10: 8364-8376. doi:10.1039/C9RA10172A.
8. TIME MACHINE: CAN A DYE FROM 1928 BE RE-PURPOSED FOR MODERN, FLUORESCENCE-BASED DETECTION OF AMYLOID-LIKE FIBRILS?
   Antimonova O.I., Grudinina N.A., Egorov V.V., Ilyin V.V., Polukeev V.A., Shavlovsky M.M., Zabrodskaya Y.A., Shabalin K.A., Yakimov A.P., Ramsay E.S., Protasov A.V.
   Dyes and Pigments, 2020, Т. 172, С. 107863.
9. Synthetic lethality by targeting the RUVBL1/2-TTT complex in mTORC1-hyperactive cancer cells
   Shin S.H., Choi S., Zhang J.M., Boskovic Z.V., Lee J.S., Kim J.H., Jeong M., Lee J.H., Petukhov M., Kim S.G., Zou L., Dong Z., Byun S.
   Science Advances, 2020, 6(31):eaay9131 
10. Charging titanium microparticles with femtosecond laser pulses
    A. A. Sergeev, V. V. Sementin, A. V. Savin, P. Yu. Serdobintsev, A. P. Pogoda, A. S. Boreysho
    Proc. SPIE 11458, Saratov Fall Meeting 2019: Laser Physics, Photonic Technologies, and Molecular Modeling, 114580C (9 April 2020); doi: 10.1117/12.2559717
11. Post-translational modifications of extracellular proteasome
    Tsimokha, A.S., Artamonova, T.O., Diakonov, E.E., Khodorkovskii, M.A., Tomilin, A.N.
    Molecules, 2020, 25(15), 3504
12. Single‐molecule analysis reveals two distinct states of the compressed RecA filament on single‐stranded DNA
    Alekseev, A., Serdakov, M., Pobegalov, G., Yakimov, A., Bakhlanova, I., Baitin, D. and Khodorkovskii, M.
    FEBS Letters, 2020, doi: 10.1002/1873-3468.13922
13. Cleavage of the outer membrane protein OmpX by protealysin regulates Serratia proteamaculans invasion
    Olga Tsaplina, Ilya Demidyuk, Tatiana Artamonova, Mikhail Khodorkovsky, Sofia Khaitlina
    FEBS Letters, 2020, doi:10.1002/1873-3468.13897

1. Single-molecule insights into ATP-dependent conformational dynamics of nucleoprotein filaments of Deinococcus radiodurans RecA
   Aleksandr Alekseev, Galina Cherevatenko, Maksim Serdakov, Georgii Pobegalov, Alexandr Yakimov, Irina Bakhlanova, Dmitry Baitin, Mikhail Khodorkovskii
   International Journal of Molecular Science, 2020

2019

1. The study of the phiKZ phage non-canonical non-virion RNA polymerase
   Mariia Orekhova, Alevtina Koreshova, Tatyana Artamonova, Mikhail Khodorkovskii, Maria Yakunina
   Biochemical and Biophysical Research Communications, 2019, Volume 511, Issue 4, Pages 759-764 
2. BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site
   Gordeeva J.,  Morozova N., Sierro N., Isaev A., Sinkunas T., Tsvetkova K., Matlashov M., Truncaite L., Morgan R.D., Ivanov N.V., Siksnys V., Zeng L., Severinov K.
   Nucleic Acids Research, 2019, Volume 47, Issue 1, Pages 253–265
3. Методы флуоресцентной микроскопии сверхвысокого разрешения и их использование для визуализации клеточных структур
   Ведяйкин А.Д., Ходорковский М.А., Вишняков И.Е.
   Цитология, 2019, 61(5): 343-356
4. Механизмы деления бактериальной клетки
   А.Д. Ведяйкин, Е.В. Пономарева, М.А. Ходорковский, С.Н. Борхсениус, И.Е. Вишняков
   Микробиология, 2019, т. 88, #3, c. 253

English version:

Mechanisms of Bacterial Cell Division
Vedyaykin, AD; Ponomareva, EV; Khodorkovskii, MA; Borchsenius, SN; Vishnyakov, IE
MICROBIOLOGY, 2019, V. 88, Is. 3, pp. 245-260

1. Photo- and cathodoluminescence spectra of diamond single crystals formed by sintering of detonation nanodiamond
   Kidalov, SV; Zamoryanskaya, MV; Kravez, VA; Sharonova, LV; Shakhov, FM; Yudina, EB; Artamonova, TO; Khodorkovskii, MA; Vul, AY
   NANOSYSTEMS-PHYSICS CHEMISTRY MATHEMATICS, Том: 10  Выпуск: 1  Стр.: 12-17
2. Systematic search for structural motifs of peptide binding to double-stranded DNA
   Nina Kolchina, Vladimir Khavinson, Natalia Linkova, Alexander Yakimov, Dmitry Baitin, Arina Afanasyeva, Michael Petukhov
   Nucleic Acids Research, 2019, V. 47. Is. 20, pp. 10553-10563
3. hnRNP‐K Targets Open Chromatin in Mouse Embryonic Stem Cells in Concert with Multiple Regulators
   Evgeny I. Bakhmet, Igor B. Nazarov, Adel R. Gazizova, Nadezhda E. Vorobyeva, Andrey A. Kuzmin, Mikhail N. Gordeev, Sergey A. Sinenko, Nikolai D. Aksenov, Tatyana O. Artamonova, Mikhail A. Khodorkovskii, Natalia Alenina, Daria Onichtchouk, Guangming Wu, Hans R. Schöler, Alexey N. Tomilin
   Stem Cells, 2019, Volume 37, Issue 8, August 2019, Pages 1018-1029
4. Synthesis and biological evaluation of [18F]fluorovinpocetine, a potential PET radioligand for TSPO imaging
   Nag S., Krasikova R., Airaksinen A.J., Arakawa R., Petukhov M., Gulyas B.
   Bioorganic & Medicinal Chemistry Letters. - 2019. - Vol. 29. - P. 2270-2274
5. Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase
   Tatyana Zyubko, Marina Serebryakova, Julia Andreeva, Mikhail Metelev, Guy Lippens, Svetlana Dubiley and  Konstantin Severinov
   Chem. Sci., 2019, 10, 9699-9707, DOI: 10.1039/C9SC02370D
6. Reiterative Synthesis by the Ribosome and Recognition of the N-Terminal Formyl Group by Biosynthetic Machinery Contribute to Evolutionary Conservation of the Length of Antibiotic Microcin C Peptide Precursor
   Inna Zukher, Michael Pavlov, Darya Tsibulskaya, Alexey Kulikovsky, Tatyana Zyubko, Dmitry Bikmetov, Marina Serebryakova, Satish K. Nair, Måns Ehrenberg, Svetlana Dubiley, Konstantin Severinov
   MBio. 2019 Apr 30;10(2). pii: e00768-19. doi: 10.1128/mBio.00768-19
7. Genome Maintenance Proteins Modulate Autoimmunity Mediated Primed Adaptation by the Escherichia coli Type I-E CRISPR-Cas System
   Kurilovich E, Shiriaeva A, Metlitskaya A, Morozova N, Ivancic-Bace I, Severinov K, et al.
   Genes. 2019 Nov;10(11):872.
8. Detection of spacer precursors formed in vivo during primed CRISPR adaptation
   Shiriaeva AA, Savitskaya E, Datsenko KA, Vvedenskaya IO, Fedorova I, Morozova N, et al.
   Nat Commun. 2019 Oct 10;10(1):4603
9. Исследование свойств синтетических полимерных матриц, изготовленных для трансплантации культивированных лимбальных стволовых клеток с целью устранения лимбальной недостаточности
   В.В. Карпович, А.Н. Куликов, С.В. Чурашов, В.Ф. Черныш, М.И. Блинова, Ю.А. Нащекина, О.И. Александрова, Ю.И. Хорольская, Т.В. Машель, Г.А. Писугина, Д.А. Переплетчикова, П.О. Никонов, Е.С. Цобкалло, О.А. Москалюк, А.С. Мельников, П.Ю. Сердобинцев, Д.А. Хороших, С.А. Ридель
   Вестник Российской Военно-медицинской Академии  2019, № 1 (65), С165-170
10. Исследование сроков биодеградации синтетических полимерных матриц как перспективных носителей лимбальных стволовых клеток
    В.В. Карпович, А.Н. Куликов, С.В. Чурашов, В.Ф. Черныш, М.И. Блинова, Ю.А. Нащекина, О.И. Александрова, Ю.И. Хорольская,Е.С. Цобкалло, О.А. Москалюк, А.С. Мельников, П.Ю. Сердобинцев, Д.А. Хороших, С.А.
    Современные технологии в офтальмологии 2019, №5(30), С.322-325
11. Oligophosphine-thiocyanate Copper(I) and Silver(I) Complexes and Their Borane Derivatives Showing Delayed Fluorescence
    Chakkaradhari, G., Eskelinen, T., Degbe, C., Belyaev, A., Melnikov, A.S., Grachova, E.V., Tunik, S.P., Hirva, P., Koshevoy, I.O.
    Inorganic Chemistry, (2019)58 (6), pp. 3646-3660,  DOI: 10.1021/acs.inorgchem.8b03166
12. Supramolecular Construction of Cyanide-Bridged ReI Diimine Multichromophores
    Kisel, K.S., Melnikov, A.S., Grachova, E.V., Karttunen, A.J., Doménech-Carbó, A., Monakhov, K.Y., Semenov, V.G., Tunik, S.P., Koshevoy, I.O.
    Inorganic Chemistry (2019), 58 (3), pp. 1988-2000, DOI: 10.1021/acs.inorgchem.8b02974
13. Reactions of Cyclometalated Platinum(II) [Pt(N ∧ C)(PR 3 )Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design
    Solomatina, A.I., Chelushkin, P.S., Abakumova, T.O., Zhemkov, V.A., Kim, M., Bezprozvanny, I., Gurzhiy, V.V., Melnikov, A.S., Anufrikov, Y.A., Koshevoy, I.O., Su, S.-H., Chou, P.-T., Tunik, S.P.
    Inorganic Chemistry, (2019), 58 (1), pp. 204-217, DOI: 10.1021/acs.inorgchem.8b02204
14. Solution: Versus solid-state dual emission of the Au(i)-alkynyl diphosphine complexes via modification of polyaromatic spacers
    Belyaev, A., Kolesnikov, I., Melnikov, A.S., Gurzhiy, V.V., Tunik, S.P., Koshevoy, I.O. 
    New Journal of Chemistry (2019), 43 (35), pp. 13741-13750. DOI: 10.1039/c9nj03426a
15. Degradation of Extracellular NAD⁺ Intermediates in Cultures of Human HEK293 Cells
    Veronika Kulikova, Konstantin Shabalin, Kirill Nerinovski, Alexander Yakimov, Maria Svetlova, Ljudmila Solovjeva, Andrey Kropotov, Mikhail Khodorkovskiy, Marie E. Migaud, Mathias Ziegler and Andrey Nikiforov
    Metabolites, 2019, 9 (12), 293;   DOI: 10.3390/metabo9120293
16. The Profile of Post-translational Modifications of Histone H1 in Chromatin of Mouse Embryonic Stem Cells
    T. Yu. Starkova, T. O. Artamonova, V. V. Ermakova, E. V. Chikhirzhina, M. A. Khodorkovskii, and A. N. Tomilin
    Acta Naturae, 2019 ,11(2): 82–91, doi: 10.32607/20758251-2019-11-2-82-91
17. DNA targeting by Clostridium cellulolyticum CRISPR Cas9 Type II-C system
    Fedorova I; Arseniev A; Selkova P; Pobegalov G; Goryanin I ; Vasileva A ; Musharova O; Abramova M; Kazalov M; Zyubko T; Artamonova T; Artamonova D; Shmakov S; Khodorkovskii M and Severinov K
    Nuclear Acid Research, 2020, gkz1225, https://doi.org/10.1093/nar/gkz1225
18. Regulation of type II restriction-modification system Esp1396I
    Antonova, D.A., Morozova, N.E., Shiryaeva, A.A., Khodorkovskii, M.A.
    Journal of Physics: Conference Series, 2019,Volume 1400, Issue 3
19. Analysis of stochasticity of gene expression in single cells of Mycoplasma gallisepticum
    Rumyantseva, N.A., Vedyaykin, A.D., Khodorkovskii, M.A., Vishnyakov, I.E., Fisunov, G.Y.
    Journal of Physics: Conference Series, 2019, Volume 1400, Issue 3
20. Fluorescent labeling of bacteriophage T7 by CRISPR-Cas9
    E.A. Znobishcheva, N.E. Morozova and M.A. Khodorkovskii
    Journal of Physics: Conference Series, 2019, Vol.1400,  doi:10.1088/1742-6596/1400/3/033005

2018

1. ИДЕНТИФИКАЦИЯ МУТАЦИИ kar1-1, ПРИВОДЯЩЕЙ К ПОВЫШЕНИЮ ЧАСТОТЫ ЦИТОДУКЦИИ И СНИЖЕНИЮ ЧАСТОТЫ ГИБРИДИЗАЦИИ У ДРОЖЖЕЙ Saccharomyces cerevisiae
   А. С. Жук, С. П. Задорский, А. А. Ширяева, О. В. Коченова, С. Г. Инге-Вечтомов, Е. И. Степченкова
   ГЕНЕТИКА, 2018, Т. 54, С. 18-21
2. Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle
   B. Wilcox, I. Osterman, M. Serebryakova, D. Lukyanov, E. Komarova, B. Gollan, N. Morozova, Y.I. Wolf, K.S. Makarova, S. Helaine, P. Sergiev, S. Dubiley, S. Borukhov, K. Severinov
   Nucleic Acids Research, 2018
3. BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site
   Gordeeva J, Morozova N, Sierro N, Isaev A, Sinkunas T, Tsvetkova K, Matlashov M, Truncaite L, Morgan RD, Ivanov NV, Siksnys V, Zeng L, Severinov K
   Nucleic Acids Research, 2018
4. Heteroleptic β-diketonate Ln(iii) complexes decorated with pyridyl substituted pyridazine ligands: Synthesis, structure and luminescence properties
   Khistiaeva, V.V., Melnikov, A.S., Slavova, S.O., Sizov, V.V., Starova, G.L., Koshevoy, I.O., Grachova, E.V.
   Inorganic Chemistry Frontiers, 2018, 5 (12), pp. 3015-3027
5. Fluorescence microscopy study of the effect of Esp1396I restriction-modification system proteins concentrations on protection against lambda phage
   Smirnov, S.V., Morozova, N.E., Khodorkovskii, M.A., Severinov, K.V.
   Journal of Physics: Conference Series, 2018, 1135(1), 012016
6. NAD Metabolome Analysis in Human Cells Using 1H NMR Spectroscopy
   Konstantin Shabalin, Kirill Nerinovski, Alexander Yakimov, Veronika Kulikova, Maria Svetlova, Ljudmila Solovjeva, Mikhail Khodorkovskiy, Stepan Gambaryan, Richard Cunningham, Marie E. Migaud, Mathias Ziegler and Andrey Nikiforov
   International Journal of Molecular Science, 2018, 19(12), 3906
7. Single-molecule localization microscopy of structures formed by FtsZ protein in living Mycoplasma gallisepticum cells
   Vedyaykin, A.D.,Drobysheva, A.V., Polinovskaya, V.S., Khodorkovskii, M.A., Vishnyakov, I.E.
   Journal of Physics: Conference Series, 2018, 1135(1), 012012
8. Protein Phosphatase 1–Targeting Small-Molecule C31 Inhibits Ebola Virus Replication
   Ammosova T., Pietzsch C.A., Saygideğer Y., Ilatovsky A., Lin X., Ivanov A., Kumari N., Jerebtsova M., Kulkarni A., Petukhov M., Üren A., Bukreyev A., Nekhai S.
   The Journal of Infectious Diseases, 2018, Vol. 218, P. S627-S635
9. Interaction of Phase-Modulated Femtosecond Pulses with an Optically Dense Quasi-Resonant Medium of Rubidium Vapors
   S. N. Bagaev. A. Preobrazhenskaya. A. Timofeev. A. Pastor. B. Mekhov. A. Chekhonin. P. Yu. Serdobintsev. S. Egorov. A. Chekhonin. M. Mashko
   Optics and Spectroscopy, 2018, Volume 125, Issue 5, pp 667–672
10. The Regulatory Role of NAD in Human and Animal Cells
    Kulikova V.A., Gromyko D.V., Nikiforov A.A.
    Biochemistry, 2018, 83(7):800-812
11. Анализ уровня НАД и НАД-зависимого деацетилированияя белков в тканях мышей
    Л.В. Соловьева, А.В. Панченко, К.А. Шабалин, К.Б. Нериновский, А.П. Якимов, Е.А. Губарева, М.П. Светлова, О.С. Мудрак, М.А. Ходорковский, А.А. Никифоров, В.А. Куликова
    Цитология, 2018, 60(7):558-562
12. Heterometallic Cluster-Capped Tetrahedral Assemblies with Postsynthetic Modification of the Metal Cores
    Shakirova, J.R., Grachova, E.V., Gurzhiy, V.V., Thangaraj, S.K., Jänis, J., Melnikov, A.S., Karttunen, A.J., Tunik, S.P., Koshevoy, I.O.
    Angewandte Chemie - International Edition, 2018
13. Luminescence Thermochromism of Gold(I) Phosphane–Iodide Complexes: A Rule or an Exception
    Glebko, N., Dau, T.M., Melnikov, A.S., Grachova, E.V., Solovyev, I.V., Belyaev, A., Karttunen, A.J., Koshevoy, I.O.
    Chemistry - A European Journal, 2018, 24 (12), pp. 3021-3029
14. Luminescent Silver–Copper “Hourglass” Hepta- and Decanuclear Alkynyl-Phosphine Clusters
    Kritchenkov, I.S., Gitlina, A.Y., Koshevoy, I.O., Melnikov, A.S., Tunik, S.P.
    European Journal of Inorganic Chemistry, 2018 (34), P.3822-3828
15. New insights into functions and possible applications of Clostridium difficile CRISPR-Cas system
    Maikova A., Severinov K., Soutourina O.
    Frontiers in Microbiology, 2018; 9: 1740
16. Discovery of new type I toxin–antitoxin systems adjacent to CRISPR arrays in Clostridium difficile
    Maikova A., Peltier J., Boudry P., Hajnsdorf E., Kint N., Monot M., Poquet I., Martin-Verstraete I., Dupuy B., Soutourina O.
    Nucleic Acids Research, 2018; 46: 4733–4751
17. Deletion of the DEF1 gene does not confer UV-immutability but frequently leads to self-diploidization in yeast Saccharomyces cerevisiae
    Stepchenkova, E.I., Shiriaeva, A.A., and Pavlov, Y.I.
    DNA Repair (Amst.), 2018, 70, 49–54
18. DNA as UV light–harvesting antenna
    IL Volkov, ZV Reveguk, PY Serdobintsev, RR Ramazanov, AI Kononov
    Nucleic acids research, 2018, 46 (7), 3543-3551
19. Propagation of the phase-modulated femtosecond pulses through the optically-dense quasi-resonant medium
    AA Preobrazhenskaia, AA Pastor, PY Serdobintsev, IA Chekhonin
    Journal of Physics: Conference Series, 2018, 1038 (1), 012071
20. Significance of poly(C)-binding proteins for pluripotent stem cells
    Bakhmet, E; Nazarov, I; Vorobyeva, N; Artamonova, T; Khodorkovskii, M; Tomilin, A
    FEBS OPEN BIO, 2018, Том: 8 Стр.: 100-100, Приложение: 1, Аннотацияквстрече: SpT.01-07
21. The unique mechanism of promoter binding by phiKZ phage non-virion RNA-polymerase
    Orekhova, M; Artamonova, T; Yakunina, M; Khodorkovskii, M
    FEBS OPEN BIO, 2018, Том: 8 Стр.: 415-415 Приложение: 1 Аннотацияквстрече: P.18-091-Mon
22. Xenon clusters fragmentation in a supersonic beam under ionization by electrons and photons (Conference Paper)
    Arseniev, A.N., Serdobintsev, P.Yu., Melnikov, A.S., Rakcheeva, L.P., Pastor, A.A., Khodorkovskii, M.A.
    Journal of Physics: Conference Series, 2018, Volume 1038, Issue 1, 012073
23. Super-resolution microscopy of Mollicutes cells (Conference Paper)
    Polinovskaya, V.S., Vedyaykin, A.D., Vishnyakov, I.E., Ivanov, V.A., Khodorkovskii, M.A.
    Journal of Physics: Conference Series, 2018, Volume 1038, Issue 1, 012029
24. Structural features of amyloid fibrils formed from the full-length and truncated forms of beta-2-microglobulin probed by fluorescent dye thioflavin T
    Sulatskaya, A.I., Rodina, N.P., Polyakov, D.S., Sulatsky, M.I., Artamonova, T.O., Khodorkovskii, M.A., Shavlovsky, M.M., Kuznetsova, I.M., Turoverov, K.K.
    International Journal of Molecular Sciences, 2018, Volume 19, Issue 9, 2762
25. Relaxation times measurement in single and multiply excited xenon clusters
    Serdobintsev, P.Y., Melnikov, A.S., Pastor, A.A., Timofeev, N.A., Khodorkovskiy, M.A.
    Journal of Chemical Physics, 2018, Volume 148, Issue 19, 194301
26. Human long intrinsically disordered protein regions are frequent targets of positive selection
    Afanasyeva A., Bockwoldt M., Cooney C.R., Heiland I., Gossmann T.I.
    Genome Research, 2018, Vol. 28, P. 975-982
27. HIV-1 Tat phosphorylation on Ser-16 residue modulates HIV-1 transcription
    Ivanov A., Lin X., Ammosova T., Ilatovskiy A.V., Kumari N., Lassiter H., Afangbedji N., Niu X., Petukhov M.G., Nekhai S
    Retrovirology, 2018, Vol. 15, P. 39
28. Production of terminally n-deacetylated oligomers of chitosane using recombinant chitooligosacharide deacetylase NodB of bacteria Mesorhizobium loti expressed in Escherichia coli
    I.V. Leppyanen, V.V. Dolgikh, T.O. Artamonova, S.A. Lopatin, M.A. Khodorkovskii, I.A. Tikhonovich, E.A. Dolgikh
    Sel’skokhozyaistvennaya Biologiya [Agricultural Biology], 2018, Vol. 53, № 1, p. 189-200
29. Cyanide-Assembled d10 Coordination Polymers and Cycles: Excited State Metallophilic Modulation of Solid-State Luminescence
    Andrey Belyaev, Toni Eskelinen, Thuy Minh Dau, Yana Yu. Ershova, Prof. Sergey P. Tunik, Dr. Alexei S. Melnikov, Prof. Pipsa Hirva, Prof. Igor O. Koshevoy
    Chemistry - A European Journal, 2018, 24, 1404

2017

1. Linking ReI and PtII Chromophores with Aminopyridines: A Simple Route to Achieve a Complicated Photophysical Behavior
   Kisel K.S., Melnikov A.S., Grachova E.V., Hirva P., Tunik S.P., Koshevoy, I.O.
   Chemistry - A European Journal, 2017, V.23, P. 11301-11311
2. Proteomic analysis of affinity-purified extracellular proteasomes reveals exclusively 20S complexes
   Valentina A. Kulichkova, Tatiana O. Artamonova, Olga G. Lyublinskaya, Mikhail A. Khodorkovskii, Alexey N. Tomilin and Anna S. Tsimokha
   Oncotarget, 2017, 8:102134-102149
3. Two-photon absorption cross section for Coumarins 102, 153 and 307
   A.S. Melnikov, P.Y. Serdobintsev, A.D. Vedyaykin, M.A. Khodorkovskii
   Journal of Physics: Conference Series, 2017. 917(6): p. 062029
4. Super-resolution microscopy of living bacterial cells
   E.V. Ponomareva, I.E. Vishnyakov, N.E. Morozova, V.S. Polinovskaya, M.A. Khodorkovskii, A.D. Vedyaykin
   Journal of Physics: Conference Series, 2017. 917(4): p. 042014
5. A truncated form of α-tubulin detected in purified proteasome complexes
   Ivanova E.Y., Artamonova T.O., Zaikova Y.Y., Khodorkovskii M.A., Tsimokha A.S.
   Cell and Tissue Biology, 2017, Volume 11, Issue 3, pp 191–196
6. The Origins of Specificity in the Microcin-Processing Protease TldD/E
   Ghilarov D., Serebryakova M., Stevenson C.E.M., Hearnshaw S.J., Volkov D.S., Maxwell A., Lawson D.M., Severinov K.
   Structure, 2017
7. Outer membrane vesicles secreted by pathogenic and nonpathogenic Bacteroides fragilis represent different metabolic activities
   Zakharzhevskaya N., Vanyushkina A., Altukhov I., Shavarda A., Butenko I., Rakitina D., Nikitina A., Manolov A., Egorova A., Kulikov E., Vishnyakov I., Fisunov G., Govorun V.
   Scientific Reports, 2017, 7: 5008
8. Linking ReI and PtII Chromophores with Aminopyridines: A Simple Route to Achieve a Complicated Photophysical Behavior
   Kisel K.S., Melnikov A.S., Grachova E.V., Hirva P., Tunik S.P., Koshevoy, I.O.
   Chemistry - A European Journal, 2017, V.23, P. 11301-11311
9. Влияниерекомбинантныхбелков FtsZ некоторыхвидовмикоплазмнапроцессделенияклеток Escherichia coli
   Ведяйкин А.Д., Полиновская В.С., Сабанцев А.В., Ходорковский М.А., Борхсениус С.Н., Вишняков И.Е.
   Цитология, 2017, 59(5): 328–336

English version:

Influence of FtsZ proteins from some mycoplasma species on the division process in Escherichia coli cells
Vedyaykin A.D., Polinovskaya V.S., Sabantsev A.V., Khodorkovskii M.A., Borchsenius S.N., Vishnyakov I.E.
Cell and Tissue Biology, 2017, 11(5): 389-398

1. Alexandra Strotskaya, Ekaterina Savitskaya, Anastasia Metlitskaya, Natalia Morozova, Kirill A. Datsenko, Ekaterina Semenova, Konstantin Severinov
   The action of Escherichia coli CRISPR–Cas system on lytic bacteriophages with different lifestyles and development strategies
   Nucleic Acids Research, 2017; 45 (4): 1946-1957
2. Электронная и многофотонная ионизация ксенона
   Митюрева А.А., Пастор А.А., Павлов К.В., Сердобинцев П.Ю., Тимофеев Н.А.
   Химическая физика, 2017, Т. 36. № 2. С. 7-9

English version:

Electron and multiphoton ionization of xenon
            A.A. Mityureva, A.A. Pastor, K.V. Pavlov, P.Yu. Serdobintsev, N.A. Timofeev
            Russian Journal of Physical Chemistry B 11.1 (2017): 9-11

1. Study of Relaxation of Multi-photon Excited Neutral Rare-Gas Molecules and Clusters in a Supersonic Jet: REMPI TOF and REMPI PES Spectroscopies of Rare-Gas Dimers and Clusters
   Khodorkovskii, Mikhail, Alexander Pastor, and Pavel Serdobintsev
   Progress in Photon Science. Springer International Publishing, 2017. 143-151
2. Possible ways to increase the efficiency of a low pressure water vapour discharge as a light source
   E Artamonova, T Artamonova, A Beliaeva, M Khodorkovskii, A Melnikov, D Michael, D Mikhailov, A Pastor, S Murashov, L Rakcheeva, P Serdobintsev, N Timofeev and G Zissis
   Lighting Research & Technology, 2017, Vol. 49 issue: 2, pages: 259-276
3. Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel
   Metelev, M; Osterman, IA; Ghilarov, D; Khabibullina, NF; Yakimov, A; Shabalin, K; Utkina, I; Travin, DY; Komarova, ES; Serebryakova, M; Artamonova, T; Khodorkovskii, M; Konevega, AL; Sergiev, PV; Severinov, K; Polikanov, YS
   Nature chemical biology, 2017, Том: 13 Выпуск: 10 Стр.: 1129
4. Experimental and theoretical distribution of electron density and thermopolimerization in crystals of Ph3Sb(O2CCH=CH2)(2) complex
   Fukin, GK; Samsonov, MA; Arapova, AV; Mazur, AS; Artamonova, TO; Khodorkovskiy, MA; Vasilyev, AV
   Journal of solid state chemistry, 2017, Том: 254 Стр.: 32-39
5. Compartment-specific poly-ADP-ribose formation as a biosensor for subcellular NAD pools
   VanLinden M., Niere M., Nikiforov A., Ziegler M., Doelle C.
   Methods in Molecular Biology, 2017, 1608: 45-56
6. Blocking the RecA activity and SOS-response in bacteria with a short α-helical peptide
   Yakimov A., Pobegalov G., Bakhlanova I., Khodorkovskii M., Petukhov M., Baitin D.
   Nucleic Acids Research, 2017, Vol. 45, P. 9788-9796
7. The identification of a protein involved in formation of cytoskeleton-like structures in Mycoplasma gallisepticum cells
   Vishnyakov I., Vedyaykin A., Khodorkovskii M., Borchsenius S.
   42th FEBS Congress, Jerusalem, Israel, September 10-14th, 2017, Abstracts, FEBS J, 284(suppl.1): 203
8. Mechanism of nicotinamide riboside and nicotinic acid riboside import into human cells
   V. Kulikova, L. Onopa, M. Svetlova, L. Solovjeva, D. Firsanov, K. Shabalin, K. Nerinovski, P. Redpath, M. E. Migaud, M. Ziegler, and A. Nikiforov
   FEBS Congress 2017 (September 10 - 14, 2017, Jerusalem, Israel). FEBS Journal. 2017. 284 (Suppl. 1). P. 370
9. The potential of various extracellular NAD precursors to maintain the synthesis of intracellular NAD in cultivated human cells
   M. Svetlova, L. Solovjeva, D. Firsanov, K. Shabalin, K. Nerinovski, V. Kulikova, M. Khodorkovskiy, P. Redpath, M. Migaud, M. Ziegler, and A. Nikiforov
   FEBS Congress 2017 (September 10 - 14, 2017, Jerusalem, Israel). FEBS Journal. 2017. 284 (Suppl. 1). P. 371
10. HPLC-MS/MS method for troventol determination in human plasma and its application to biological samples
    Aleksandra Nikitina, Alexander Grigoriev, Alla Sidorova
    Journal of Pharmaceutical and Biomedical Analysis, 2017
11. A non-canonical multisubunit RNA polymerase encoded by the AR9 phage recognizes the template strand of its uracil-containing promoters
    Sokolova M, Borukhov S, Lavysh D, Artamonova T, Khodorkovskii M, Severinov K
    Nucleic Acids Research, 2017, 45(10):5958-5967
12. BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks
    Yan WX, Mirzazadeh R, Garnerone S, Scott D, Schneider MW, Kallas T, Custodio J, Wernersson E, Li Y, Gao L, Federova Y, Zetsche B, Zhang F, Bienko M, Crosetto N
    Nature Communications, 2017, 8:15058
13. Polynuclear cage-like Au(i) phosphane complexes based on a S2− template: observation of multiple luminescence in coordinated polyaromatic systems
    Shakirova, J.R., Grachova, E.V., Sizov, V.V., Starova, G.L., Koshevoy, I.O., Melnikov, A.S., Gimeno, M.C., Laguna, A., Tunik, S.P.
    Dalton Transactions, 2017, Volume 46, Issue 8, Pages 2516-2523
14. Lipophilic phosphorescent gold(I) clusters as selective probes for visualization of lipid droplets by two-photon microscopy
    Koshel, E.I., Chelushkin, P.S., Melnikov, A.S., Serdobintsev, P.Y., Stolbovaia, A.Y., Saifitdinova, A.F., Shcheslavskiy, V.I., Chernyavskiy, O., Gaginskaya, E.R., Koshevoy, I.O., Tunik, S.P.
    Journal of Photochemistry and Photobiology A: Chemistry, 2017, Volume 332, Pages 122-130
15. Post-translational modifications of linker histone H1 variants in mammals
    T Yu Starkova, A M Polyanichko, T O Artamonova, M A Khodorkovskii, E I Kostyleva, E V Chikhirzhina and A N Tomilin
    Physical Biology, 2017, Volume 14, Number 1, 016005
16. Coordination to Imidazole Ring Switches on Phosphorescence of Platinum Cyclometalated Complexes: The Route to Selective Labeling of Peptides and Proteins via Histidine Residues
    Anastasia I. Solomatina, Pavel S. Chelushkin, Dmitrii V. Krupenya, Ivan S. Podkorytov, Tatiana O. Artamonova, Vladimir V. Sizov, Alexei S. Melnikov, Vladislav V. Gurzhiy, Elena I. Koshel, Vladislav I. Shcheslavskiy, and Sergey P. Tunik
    Bioconjugate Chemistry, 2017, 28 (2), pp 426–437
17. Recombinant small heat shock protein from Acholeplasma laidlawii increases the Escherichia coli viability in thermal stress by selective protein rescue
    A. R. Kayumov, M. I. Bogachev, V. A. Manuvera, V. N. Lazarev, A. V. Sabantsev, T. O. Artamonova, S. N. Borchsenius, I. E. Vishnyakov
    Molecular Biology, 2017, Volume 51, Issue 1, pp 112–121
18. Interaction of Bacteroides fragilis toxin with outer membrane vesicles reveals new mechanism of its secretion and delivery
    Zakharzhevskaya N., Tsvetkov V.B., Vanyushkina A., Varizhuk A., Rakitina D., Podgorsky V., Vishnyakov I., Kharlampieva D., Manuvera V., Lisitsyn F., Gushina E., Lazarev V., Govorun V.
    Frontiers in Cellular and Infection Microbiology. 7:2. doi: 10.3389/fcimb.2017.00002
19. Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae
    Mikhail Metelev, Anatolii Arseniev, Leah B. Bushin, Konstantin Kuznedelov, Tatiana O. Artamonova, Ruslan Kondratenko, Mikhail Khodorkovskii, Mohammad R. Seyedsayamdost, and Konstantin Severinov
    ACS Chemical Biology, 2017
20. Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases
    Daria Lavysh, Maria Sokolova, Marina Slashcheva, Konrad U. Förstner, Konstantin Severinov
    mBio, 2017, V. 8, Is. 1, e02041-16
21. Lipophilic phosphorescent gold(I) clusters as selective probes for visualization of lipid droplets by two-photon microscopy
    Koshel, E.I., Chelushkin, P.S., Melnikov, A.S., Serdobintsev, P.Y., Stolbovaia, A.Y., Saifitdinova, A.F., Shcheslavskiy, V.I., Chernyavskiy, O., Gaginskaya, E.R., Koshevoy, I.O., Tunik, S.P.
    Journal of Photochemistry and Photobiology A: Chemistry, 2017, Volume 332, Pages 122-130

2016

1. Recombinant FtsZ Proteins from Mollicutes Interact with Escherichia coli Division Machinery
   Alexey D. Vedyaykin, Anton V. Sabantsev, Mikhail A. Khodorkovskii, Airat R. Kayumov, Innokentii E. Vishnyakov
   BioNanoScience, 2016, pp. 1–4
2. 3D super-resolution microscopy of bacterial division machinery
   A D Vedyaykin, A V Sabantsev, I E Vishnyakov, N E Morozova, V S Polinovskaya and M A Khodorkovskii, 3D super-resolution microscopy of bacterial division machinery
   Journal of Physics: Conference Series, 2016, Volume 741, Number 1, 012066
3. Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation
   Konstantin Kuznedelov, Vladimir Mekler, Sofia Lemak, Monika Tokmina-Lukaszewska, Kirill A. Datsenko, Ishita Jain, Ekaterina Savitskaya, John Mallon, Sergey Shmakov, Brian Bothner, Scott Bailey, Alexander F. Yakunin, Konstantin Severinov and Ekaterina Semenova
   Nucleic Acids Research, 2016
4. The temperature-dependent selectivity of potential interaction partners for the small heat shock protein IbpA from Acholeplasma laidlawii
   Vishnyakov I.E., Bogachev M.I., Salafutdinov I., Borchsenius S.N., Kayumov A.R.
   BioNanoScience, 2016
5. Mycoplasma diversity in Arctic permafrost
   Vishnyakov I.E., Borchsenius S.N., Kayumov A.R., Rivkina E.M.
   BioNanoScience, 2016
6. Fluorescence saturation spectroscopy in probing electronically excited states of silver nanoclusters
   Volkov, I., Sych, T., Serdobintsev, P., Reveguk, Z., Kononov, A.
   Journal of Luminescence, 2016, Volume 172, pp. 175-179
7. A potential role of the Nudix pyrophosphatase NUDT13 in the regulation of the mitochondrial NAD contents
   V. Kulikova, V. Kharchenko, M. Van Linden, M. Khodorkovskiy, M. Ziegler, A. Nikiforov
   FEBS Journal. 2016. 283 (Suppl. 1). P: 214
8. Peptide-based inhibitor of RecA protein activity
   A. Yakimov, G. Pobegalov, I. Bakhlanova, M. Khodorkovskii, M. Petukhov, D. Baitin
   FEBS Journal, 283: P-03.03.2-015
9. Role of C-terminal domain dynamics in RecA protein activities
   A. Yakimov, D. Karelov, O. Kovaleva , M. Khodorkovskii , D. Baitin, M. Petukhov
   FEBS Journal, 283: P-01.01.1-004
10. Exploring bitterness of traditional Chinese medicine samples by potentiometric electronic tongue and by capillary electrophoresis and liquid chromatography coupled to UV detection
    Irina Yaroshenko, Dmitry Kirsanov, Lyudmila Kartsova, Alla Sidorova, Qiyong Sun, Haitong Wan, Yu He, Ping Wang, Andrey Legin
    Talanta, 2016, 152, pp. 105 – 111
11. Solid-State and Solution Metallophilic Aggregation of a Cationic [Pt(NCN)L]+ Cyclometalated Complex
    V.V. Sivchik, E.V. Grachova, A.S. Melnikov, S.N. Smirnov, A.Y. Ivanov, P. Hirva, P., S.P. Tunik, I.O. Koshevoy
    Inorganic Chemistry, 2016, V.55, N.7, P. 3351-3363
12. Структура и механизмы действия полифункциональных белков семейства TIP49
    А.С. Афанасьева, А.П. Якимов, М.Ю. Григорьев, М.Г. Петухов
    Цитология, 2016, Т. 58, № 11, с. 809-816
13. Восстановление процесса деления в бактериальных клетках после индукции белка SulA, отвечающего за прекращение цитокинеза при SOS-ответе
    Ведяйкин А.Д., Сабанцев А.В., Вишняков И.Е., Морозова Н.Е., Ходорковский М.А.
    Цитология, 2016, 58(12), 930-935

English version:

Recovery of division process in bacterial cells after induction of SulA protein which is responsible for cytokinesis arrest during SOS - response
Vedyaykin A.D., Sabantsev A.V., Vishnyakov I.E., Vishnyakov I.E., Morozova N.E., Khodorkovskii M.A.
Cell and Tissue Biology. 2017; 11(2): 89-94

1. Рекомбиногенный потенциал белков RecA: эволюционные возможности и последствия для бактериальной клетки
   И.В. Бахланова, Д.М. Байтин
   Цитология, 2016, т. 58, № 11, с. 817-824
2. Дизайн стабильных α-спиральных пептидов и термостабильных белков в биотехнологии и биомедицине
   А. П. Якимов, А. С. Афанасьева, М. А. Ходорковский, М. Г. Петухов
   ACTA NATURAE, 2016, Т. 8, № 4 (31), с. 67-78

English version:

Design of Stable α-Helical Peptides and Thermostable Proteins in Biotechnology and Biomedicine
A.P. Yakimov, A.S. Afanaseva, M.A. Khodorkovskiy, and M.G. Petukhov
Acta Naturae, 2016, 8(4), pp. 70–81

1. NAD metabolome analysis in cultured human cells using 1H NMR spectroscopy
   Shabalin, K.; Nerinovski, K.; Yakimov, A.; Kulikova, V.; Khodorkovskiy, M.; Ziegler, M.; Nikiforov, A.
   In Proceedings of the 1st Int. Electron. Conf. Metabolomics, 1–30 November 2016; Sciforum Electronic Conference Series, Vol. 1, 2016 , C002
2. Superelectrophilic activation of 5-hydroxymethylfurfural and 2,5-diformylfuran: organic synthesis based on biomass-derived products
   Dmitry S. Ryabukhin, Dmitry N. Zakusilo, Mikhail O. Kompanets, Anton A.Tarakanov, Irina A. Boyarskaya, Tatiana O. Artamonova, Mikhail A. Khohodorkovskiy, Iosyp O. Opeida and Aleksander V. Vasilyev
   Beilstein Journal of Organic Chemistry, 2016, 12, 2125–2135
3. The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases
   Daria Lavysh, Maria Sokolova, Leonid Minakhin, Maria Yakunina, Tatjana Artamonova, Sergei Kozyavkin, Kira S. Makarova, Eugene V. Koonin, Konstantin Severinov
   Virology, 2016, V. 495, pp. 185–196
4. Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex
   Ekaterina Semenova, Ekaterina Savitskaya, Olga Musharova, Alexandra Strotskaya, Daria Vorontsova, Kirill A. Datsenko, Maria D. Logacheva, and Konstantin Severinov
   Proceedings of the National Academy of Sciences of the United States of America, 2016, V. 113, Is. 27, pp. 7626–7631
5. Development of a HPLC–MS/MS method for the simultaneousdetermination of nifedipine and lidocaine in human plasma
   Alexander Grigoriev,, Alexandra Nikitina, Irina Yaroshenko, Alla Sidorova
   Journal of Pharmaceutical and Biomedical Analysis, 2016, 131, pp. 13–19
6. "DNA Metabolism in Balance: Rapid Loss of a RecA-Based Hyperrec Phenotype"
   Irina V. Bakhlanova, Alexandra V. Dudkina, Elizabeth A. Wood, Vladislav A. Lanzov, Michael M. Cox , Dmitry M. Baitin
   PLOS ONE, 2016, doi: 10.1371/journal.pone.0154137
7. "In vitro and in vivo stability of oseltamivir within a bioequivalence trial"
   Alexander Grigoriev, Irina Borisova, Irina Yaroshenko, Alla Sidorova
   Analytical and Bioanalytical Chemistry, Analytical and Bioanalytical Chemistry, 2016, pp 1-7
8. "Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow"
   Anna Lopatina, Sofia Medvedeva, Sergey Shmakov, Maria D. Logacheva, Vjacheslav Krylenkov and Konstantin Severinov
   Frontiers in Microbiology, 2016, doi: 10.3389/fmicb.2016.00398
9. "Study of structure of industrial acid hydrolysis lignin, oxidized in the H2O2-H2SO4 system"
   Evstigneyev E.I., Yuzikhin O.S., Gurinov A.A., Ivanov A.Yu., Artamonova T.O., Khodorkovskiy M.A., Bessonova E.A., Vasilyev A.V.
   Journal of Wood Chemistry and Technology, 2016, V. 36, N. 4, P. 259-269
10. "Белки RecX Deinococcus radiodurans и RecX Escherichiacoli способны замещать друг друга in vivo и in vitro"
    И.В. Бахланова, Д.М.Байтин
    Генетика, 2016, том 52, номер 3, с. 293-299

English version:

"Deinococcus radiodurans RecX and Escherichia coli RecX proteins are capable to replace each other in vivo and in vitro"
I. V. Bakhlanova , D. M. Baitin
Russian Journal of Genetics, 2016, V. 52, Is. 3, pp. 257-262

1. "Kinetics of the CRISPR-Cas9 effector complex assembly and the role of 3′ -terminal segment of guide RNA"
   Vladimir Mekler, Leonid Minakhin, Ekaterina Semenova, Konstantin Kuznedelov and Konstantin Severinov
   Nucleic Acids Research, 2016
2. "Supramolecular AuI–CuI Complexes as New Luminescent Labels for Covalent Bioconjugation"
   Andrei A. Belyaev, Dmitrii V. Krupenya, Elena V. Grachova, Vladislav V. Gurzhiy, Alexei S. Melnikov, Pavel Yu. Serdobintsev, Ekaterina S. Sinitsyna, Evgenia G. Vlakh, Tatiana B. Tennikova, and Sergey P. Tunik
   Bioconjugate Chemistry, 2016, V. 27, Is. 1, pp. 143–150
3. "New insights into FtsZ rearrangements during the cell division of Escherichia coli from single-molecule localization microscopy of fixed cells"
   Vedyaykin, A.D., Vishnyakov, I.E., Polinovskaya, V.S., Khodorkovskii, M.A., Sabantsev, A.V
   MicrobiologyOpen, 2016

2015

1. "CRISPR interference and priming varies with individual spacer sequences"
   Chaoyou Xue, Arun S. Seetharam, Olga Musharova, Konstantin Severinov, Stan J. J. Brouns, Andrew J. Severin and Dipali G. Sashital
   Nucleic Acids Research, 2015, doi: 10.1093/nar/gkv1259
2. "Foreign DNA acquisition by the I-F CRISPR–Cas system requires all components of the interference machinery"
   Daria Vorontsova, Kirill A. Datsenko, Sofia Medvedeva, Joseph Bondy-Denomy, Ekaterina E. Savitskaya, Ksenia Pougach, Maria Logacheva, Blake Wiedenheft, Alan R. Davidson, Konstantin Severinov, and Ekaterina Semenova
   Nucleic Acids Research, 2015, doi: 10.1093/nar/gkv1261
3. "Temporal dynamics of methyltransferase and restriction endonuclease accumulation in individual cells after introducing a restriction-modification system"
   Natalia Morozova, Anton Sabantsev, Ekaterina Bogdanova, Yana Fedorova, Anna Maikova, Alexey Vedyaykin, Andjela Rodic, Marko Djordjevic, Mikhail Khodorkovskii and Konstantin Severinov
   Nucleic Acids Research, 2015
4. "Химическое строение и физико-химические свойства окисленного гидролизного лигнина"
   Евстигнеев Э. И., Юзихин О. С., Гуринов А. А., Иванов А. Ю., Артамонова Т. О., Ходорковский М. А., Бессонова Е. А., Васильев А. В.
   Журнал прикладной химии, 2015, Т. 88. № 8. С. 1175

English version:

"Chemical structure and physicochemical properties of oxidized hydrolysis lignin"
Evstigneyev, EI; Yuzikhin, OS; Gurinov, AA; Ivanov, AY; Artamonova, TO; Khodorkovskii, MA; Bessonova, EA; Vasil'ev, AV
Russian journal of Applied Chemistry, Том: 88 Выпуск: 8 Стр.: 1295-1303

1. "Determination of urine ionic composition with potentiometric multisensor system"
   Irina Yaroshenko, Dmitry Kirsanov, Lyudmila Kartsova, Alla Sidorova, Irina Borisova, Andrey Legin
   Talanta, 2015, 131, pp. 556–561
2. "Разработка хромато-масс-спектрометрического метода определения моксифлоксацина в плазме крови для исследований сравнительной фармакокинетики"
   И.С. Ярошенко, А.Я. Хайменов, А.В. Григорьев, А.А. Сидорова
   Журнал аналитической химии, 2015, том 70, № 7, с. 745–753

English version:

"A Chromatographic–Mass Spectrometric Method for the Determination of Moxifloxacin in Blood Plasma for Pharmacokinetic Studies"
I. S. Yaroshenko, A. Ya. Khaimenov, A. V. Grigoriev, and A. A. Sidorova
Journal of Analytical Chemistry, 2015, Vol. 70, No. 7, pp. 860–868

1. "Плазма разряда в смеси аргона и паров воды как среда газового лазера"
   Михайлов Д.В., Пастор А.А., Сердобинцев П.Ю., Тимофеев Н.А., Ходорковский М.А.
   Химическая физика, 2015, т. 34, № 8, с. 94

English version:

"Discharge plasma in an argon-water vapor mixture as a gas laser medium"
Mikhailov, DV; Pastor, AA; Serdobintsev, PY; Timofeev, NA; Khodorkovskii, MA
Russian Journal of physical chemistry B, 2015, V. 9, Is. 4, pp. 593-595

1. "Динамика и механизмы взаимодействия гетерогексамерных кольцевых комплексов белков TIP49a/b с двунитевой ДНК"
   Афанасьева А.С. Григорьев М.Ю. Петухов М.Г., Якимов А.П.
   Цитология, 2015, Т. 57, № 10, с. 671–678

English version:

"Dynamics and mechanisms of interactions between ring-shaped heterohexameric TIP49a/b protein complexes and double-stranded DNA"
A.S. Afanasyeva, A.P. Yakimov, M.Y. Grigoriev and M.G. Petukhov
Cell and Tissue Biology, 2016, 10(1), pp. 47-54

1. "HSA-based phosphorescent probe for two-photon in vitro visualization"
   Pavel S. Chelushkin, Natalia V. Nukolova, Alexei S. Melnikov, Pavel Yu. Serdobintsev, Pavel A. Melnikov, Dmitry V. Krupenya, Igor O. Koshevoy, Sergey V. Burov, b, Sergey P. Tunik
   Journal of Inorganic Biochemistry, 2015, V. 149, pp. 108–111
2. "Multi-color localization microscopy of fixed cells as a promising tool to study organization of bacterial cytoskeleton"
   A D Vedyaykin, V V Gorbunov, A V Sabantsev, V S Polinovskaya, I E Vishnyakov, A S Melnikov, P Yu Serdobintsev and M A Khodorkovskii
   Journal of Physics: Conference Series, 2015, 643, 012020
3. "Synthesis and Functional Characterization of Bioactive Microcin C-Like Compounds with Altered Peptide Sequence and Length"
   Olga Bantysh, Marina Serebryakova, Inna Zukher, Alexey Kulikovsky, Darya Tsibulskaya, Svetlana Dubiley, Konstantin Severinov
   Journal of Bacteriology, 2015, 197, 19
4. "Generation, release and uptake of the NAD precursor nicotinic acid riboside by human cells"
   Veronika Kulikova, Konstantin Shabalin, Kirill Nerinovski, Christian Dölle, Marc Niere, Alexander Yakimov, Philip Redpath, Mikhail Khodorkovskiy, Marie E. Migaud, Mathias Ziegler and Andrey Nikiforov
   The Journal of biological chemistry, 2015
5. "Subcellular Distribution of NAD+ between Cytosol and Mitochondria Determines the Metabolic Profile of Human Cells"
   Magali R. VanLinden, Christian Dölle, Ina K. N. Pettersen, Veronika A. Kulikova, Marc Niere, Gennaro Agrimi, Sissel E. Dyrstad, Ferdinando Palmieri, Andrey A. Nikiforov, Karl Johan Tronstad and Mathias Ziegler
   Journal of Biological chemistry, 2015
6. "A non-canonical multisubunit RNA polymerase encoded by a giant bacteriophage"
   Yakunina, Maria; Artamonova, Tatyana; Borukhov, Sergei; Severinov, Konstantin; Minakhin, Leonid
   Nucleic Acids Research, 2015
7. "Новые данные о структурах, формируемых белком FtsZ в клетках Escherichia coli в процессе деления, полученные методом локализационной микроскопии"
   А.Д. Ведяйкин, И.Е. Вишняков, В.С. Полиновская, Т.О. Артамонова, М.А. Ходорковский, А.В. Сабанцев
   Цитология, 2015, Т. 57, №11, с. 823 – 830

English version:

"New data on structures formed by the FtsZ protein during the cell division process in Escherichia coli obtained using the localization microscopy method"
A. D. Vedyaykin, I. E. Vishnyakov, V. S. Polinovskaya, T. O. Artamonova, M. A. Khodorkovskii,A. V. Sabantsev
Cell and Tissue Biology, 2016, V. 10, Is. 1, pp 76-83

1. "Deinococcus radiodurans RecA nucleoprotein filaments characterized at the single-molecule level with optical tweezers"
   Georgii Pobegalov, Galina Cherevatenko, Aleksandr Alekseev, Anton Sabantsev, Oksana Kovaleva, Alexey Vedyaykin, Natalia Morozova, Dmitrii Baitin, Mikhail Khodorkovskii
   Biochemical and Biophysical Research Communications, V. 466, Is. 3, pp. 426–430
2. "Relaxation channels of multi-photon excited xenon clusters"
   P. Yu. Serdobintsev, L. P. Rakcheeva, S. V. Murashov, A. S. Melnikov, S. Lyubchik, N. A. Timofeev, A. A. Pastor and M. A. Khodorkovskii
   Journal of Chemical Physics, 2015, 143, 114302
3. "AquaBridge: A novel method for systematic search of structural water molecules within the protein active sites"
   A. Afanasyeva, S. Izmailov, M. Grigoriev, M. Petukhov
   Journal of Computational Chemistry, 2015, V. 36, Is. 26, pp. 1973–1977
4. "The human NAD metabolome: Functions, metabolism and compartmentalization"
   Andrey Nikiforov, Veronika Kulikova, Mathias Ziegler
   Critical Reviews in Biochemistry and Molecular Biology, 2015, V. 50, Is. 4, 284-297
5. "α-Galactobiosyl units: thermodynamics and kinetics of their formation by transglycosylations catalysed by the GH36 α-galactosidase from Thermotoga maritima"
   Anna S. Borisova, Dina R. Ivanen, Kirill S. Bobrov, Elena V. Eneyskaya, Georgy N. Rychkov, Mats Sandgren, Anna A. Kulminskaya, Michael L. Sinnott, Konstantin A. Shabalin
   Carbohydrate Research, 2015, V. 401, pp. 115–121
6. "The method of integrated kinetics and its applicability to the exo-glycosidase-catalyzed hydrolyses OF P-Nitrophenyl glycosides"
   Anna S Borisova, Sumitha K Reddy, Dina R Ivanen, Kirill S Bobrov, Elena V Eneyskaya, Georgy N Rychkov, Mats Sandgren, Henrik Stålbrand, Michael L Sinnott, Anna A Kulminskaya, Konstantin A Shabalin
   Carbohydrate Research, Volume 412, 14 pp. 43–49
7. "Yeast red pigment modifies Amyloid beta growth in Alzheimer disease models in both Saccharomyces cerevisiae and Drosophila melanogaster"
   Ekaterina V. Mikhailova, Triana R. Amen, Valeriy V. Zenin, Alexey V. Artemov, Elena I. Kostyleva, Daria A. Mezhenskaya, Dmitry I. Rodin, Alsu F. Saifitdinova, Mikhail A. Khodorkovskii, Svetlana V. Sarantseva, and Tonu R. Soidla
   Amyloid, 2015, 22, 2 , pp. 100-111
8. "Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases"
   Robert T Byrnea, Huw T Jenkins, Daniel T Petersa, Fiona Whelana, James Stowella, Naveed Azizb, Pavel Kasatsky , Marina V Rodnina , Eugene V. Koonin , Andrey L Konevega, and Alfred A Antson
   Proceedings of the National Academy of Sciences of the United States of America, 2015, 112, 19, pp. 6033–6037
9. "Reactivation of Latent HIV-1 Provirus via Targeting Protein Phosphatase-1"
   Mudit Tyagi, Sergey Iordanskiy, Kahli Smith, Denitra Breuer, Namita Kumari, Andrey V Ilatoskiy, Tatyana Ammosova, Yasemin Saygideger Kont, Andrey Ivanov, Aykut Üren, Dmytro Kovalskyy, Michael Petukhov, Fatah Kashanchi and Sergei Nekhai
   Retrovirology, 2015, 12:63
10. "The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system"
    Semenova E, Kuznedelov K, Datsenko KA, Boudry PM, Savitskaya EE, Medvedeva S, Beloglazova N, Logacheva M, Yakunin AF, Severinov K
    Nucleic Acids Research, 2015, doi: 10.1093/nar/gkv546
11. "Rapid Multiplex Creation of Escherichia coli Strains Capable of Interfering with Phage Infection Through CRISPR"
    Strotksaya, Alexandra; Semenova, Ekaterina; Savitskaya, Ekaterina; Severinov, Konstantin
    Methods in molecular biology, 2015, V. 1311, pp. 147-159
12. "Syntheses, Structures, and Photophysical Properties of Eu and Lu Diketonates with a Neutral Polydentate Imidazolylmethanamine Ligand"
    Kisel, K.S., Linti, G., Starova, G.L., Sizov, V.V., Melnikov, A.S., Pushkarev, A.P., Bochkarev, M.N., Grachova, E.V. , Tunik, S.P.
    European Journal of Inorganic Chemistry, 2015, V. 2015, Is. 10, pp. 1734-1743
13. "Structure of the E. coli ribosome–EF-Tu complex at <3 Å resolution by C_s-corrected cryo-EM"
    Niels Fischer, Piotr Neumann, Andrey L. Konevega, Lars V. Bock, Ralf Ficner, Marina V. Rodnina & Holger Stark
    Nature, 2015, 520, pp. 567–570
14. "Simultaneous EGFP and Tag Labeling of the β7 Subunit for Live Imaging and Affinity Purification of Functional Human Proteasomes"
    Valentina A Kulichkova, Tatiana O Artamonova, Julia J Zaykova, Julia B Ermolaeva, Mikhail A Khodorkovskii, Nikolai A Barlev, Alexey N Tomilin, Anna S Tsimokha
    Molecular Biotechnology, 2015, V. 57, Is. 1, pp. 36-44
15. "Structure, Bioactivity, and Resistance Mechanism of Streptomonomicin, an Unusual Lasso Peptide from an Understudied Halophilic Actinomycete"
    Mikhail Metelev, Jonathan I. Tietz, Joel O. Melby, Patricia M. Blair, Lingyang Zhu, Itamar Livnat, Konstantin Severinov, Douglas A. Mitchell
    Chemistry and Biology, 2015, V. 22, Is. 2, pp. 241–250

2014

1. "High-efficiency translational bypassing of non-coding nucleotides specified by mRNA structure and nascent peptide"
   Ekaterina Samatova, Andrey L. Konevega, Norma M. Wills, John F. Atkins & Marina V. Rodnina
   Nature Communications, 2014, 5, Article number: 4459
2. "Study of hepatocyte plasma membrane mechanical properties using optical trapping"
   A D Vedyaykin, N E Morozova , G E Pobegalov, A N Arseniev, M A Khodorkoskii and A V Sabantsev
   Journal of Physics: Conference Series, 2014, 572, 012016
3. "De novo design of stable alpha-helices"
   Aleksandr Yakimov, Georgy Rychkov, Michael Petukhov
   Protein Design, Methods in Molecular Biology, 2014, V. 1216, pp. 1-14
4. "Coinage metal complexes supported by the Tri- and tetraphosphine ligands"
   Dau, M.T., Shakirova, J.R., Karttunen, A.J., Grachova, E.V. , Tunik, S.P., Melnikov, A.S., Pakkanen, T.A., Koshevoy, I.O.
   Inorganic Chemistry, 2014, V.53, N.9, pp. 4705-4715
5. "Synthesis, characterization, luminescence and non-linear optical properties of diimine platinum(II) complexes with arylacetylene ligands"
   Melekhova, A.A., Krupenya, D.V., Gurzhiy, V.V., Melnikov, A.S., Serdobintsev, P.Y., Selivanov, S.I., Tunik, S.P.
   Journal of Organometallic Chemistry, 2014, V. 763-764, pp. 1-5
6. "Определение силы взаимодействия промотора с РНК-полимеразой Pseudomonas aeruginosa на стадии инициации транскрипции"
   Побегалов Г.Е., Арсениев А.Н., Якунина М.В., Минахин Л.С.
   Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2014, Выпуск 4, с. 89-96
7. "Ribosome-controlled transcription termination is essential for the production of antibiotic microcin"
   Inna Zukher, Maria Novikova, Anton Tikhonov, Mikhail Nesterchuk, Ilya Osterman, Marko Djordjevic, Petr Sergiev, Cynthia Sharma and Konstantin Severinov
   Nucleic Acids Research, 2014, V. 42, Is. 19, pp. 11891-11902
8. "Определение реина в плазме крови методом ВЭЖХ c ультрафиолетовым детектированием и применение к исследованию биоэквивалентности"
   И.С. Ярошенко, А.Я. Хайменов, А.В. Григорьев, А.А. Сидорова
   Журнал Аналитической Химии, 2014, т. 69, № 8, с. 868

English version:

"Determination of Rhein in blood plasma by HPLC with UV detection and its application to the study of bioequivalence"
S. Yaroshenko, A. Ya. Khaimenov, A. V. Grigoriev, A. A. Sidorova
Journal of Analytical Chemistry, 2014, Volume 69, Issue 8, pp 793-799

1. "Transformations of Bjorkman lignin from European spruce (Picea abies) in superacidic media"
   Aleksandra V. Nemceva, Dmitry S. Ryabukhin, Tatyana O. Artamonova, Mikhail A. Khodorkovsky, Mikhail Ya. Zarubin and Aleksander V. Vasilyev
   Mendeleev communications, 2014, V. 24, pp. 353-354
2. "Масс-спектрометрический анализ аффинно-очищенных протеасом из клеток миелогенной лейкемии человека линии К562"
   Артамонова Т.О., Ходорковский М.А., Цимоха А.С.
   Биоорганическая химия, 2014, Т. 40, № 6, c. 720-734

English version:

"Mass Spectrometric Analysis of Affinity- Purified Proteasomes from the Human Myelogenous Leukemia Cell Line K562"
Artamonova T. O., Khodorkovskii M. A., Tsimokha A. S.
Russian Journal of Bioorganic Chemistry, 2014, Vol. 40, No. 6, pp. 664–678

1. "Localization microscopy study of FtsZ structures in E. coli cells during SOS-response"
   A D Vedyaykin, A V Sabantsev, I E Vishnyakov, S N Borchsenius, Y V Fedorova, A S Melnikov, P Yu Serdobintsev and M A Khodorkovskii
   Journal of Physics: Conference Series, 2014, 541, 012036
2. "Extracellular membrane vesicles secreted by mycoplasma Acholeplasma laidlawii PG8 are enriched in virulence proteins"
   Vladislav M. Chernova, Alexey A. Mouzykantova, Natalia B. Baranova, Elena S. Medvedeva, Tatiana Yu Grygorieva, Maxim V. Trushin, Innokentii E. Vishnyakov, Anton V. Sabantsev, Sergei N. Borchsenius, Olga A. Chernova
   Journal of Proteomics, 2014, Vol. 110, pp. 117–128
3. "The RimL Transacetylase Provides Resistance to Translation Inhibitor Microcin C"
   Teymur Kazakov, Konstantin Kuznedelov, Ekaterina Semenova, Damir Mukhamedyarov, Kirill A. Datsenko, Anastasija Metlitskaya, Gaston H. Vondenhoff, Anton Tikhonov, Vinayak Agarwale, Satish Naire, Arthur Van Aerschotd and Konstantin Severinov
   Journal of Bacteriology, V. 196, № 19, pp. 3377–3385
4. "Low-power optical bistability and hysteresis in the laser system with absorbing nanosuspension"
   Pobegalov G, Agruzov P, Ilichev I, Shamray A.
   Optics Letters, 2014, V. 39, Is. 9, pp. 2819-22
5. "The Molecular Mechanism of Aminopropylation of Peptide-Nucleotide Antibiotic Microcin C"
   Alexey Kulikovsky, Marina Serebryakova, Olga Bantysh, Anastasia Metlitskaya , Sergei Borukhov , Konstantin Severinov, and Svetlana Dubiley
   Journal of the American Chemical Society, 2014, V. 136, Is. 31, pp. 11168–11175
6. "Development of giant bacteriophage ФKZ is independent of the host transcription apparatus"
   Ceyssens PJ, Minakhin L, Van den Bossche A, Yakunina M, Klimuk E, Blasdel B, De Smet J, Noben JP, Bläsi U, Severinov K, Lavigne R
   Journal of Virology, 2014, pii: JVI.01347-14
7. "Lytic Water Dynamics Reveal Evolutionarily Conserved Mechanisms of ATP Hydrolysis by TIP49 AAA+ ATPases"
   Arina Afanasyeva, Angela Hirtreiter, Anne Schreiber, Dina Grohmann, Georgii Pobegalov, Adam R. McKay,Irina Tsaneva, Michael Petukhov, Emmanuel Kas, Mikhail Grigoriev, and Finn Werner
   Structure, 2014, 22, pp. 1–11
8. "Характеризация кальций связывающих свойств домена 6 виллина"
   А.В. Сабанцев, С.О. Федечкин, М.А. Ходорковский, Г.Е Побегалов, А.Д. Ведяйкин, С.Л. Смирнов
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2014, № 1 (189), с. 101-107
9. "Определение дигидроксимелфалана в перфузате, плазме крови и ткани легкого методом ВЭЖХ-МС. Применение к фармакокинетическому исследованию"
   А.А. Сидорова, А.В. Григорьев, Е.С. Тимофеева, Е.В. Левченко
   Журнал аналитической химии, 2014, том 69, № 4, с. 421-428

English version:

"Determination of dihydroxymelphalan in perfusate, blood plasma, and lung tissue by HPLC-MS: Use in a pharmacokinetic study"
А.A. Sidorova, A. V. Grigoriev, E. S. Timofeeva, E. V. Levchenko
Journal of Analytical Chemistry, 2014, V. 69, Is. 4, pp. 377-383

1. "Antibiotic streptolydigin requires noncatalytic Mg²⁺ for binding to RNA polymerase"
   Zorov S, Yuzenkova Y, Nikiforov V, Severinov K, Zenkin N
   Antimicrobial Agents and Chemotherapy, 2014, V. 58, Is. 3, pp. 1420-4
2. "Pervasive generation of oppositely oriented spacers during CRISPR adaptation"
   Shmakov S, Savitskaya E, Semenova E, Logacheva MD, Datsenko KA, Severinov K
   Nucleic Acids Research, 2014, V. 42, Is. 9, pp. 5907-16
3. "Enzymatic synthesis of bioinformatically predicted microcin C-like compounds encoded by diverse bacteria"
   Bantysh O, Serebryakova M, Makarova KS, Dubiley S, Datsenko KA, Severinov K
   MBio, 2014, V. 5, Is. 3, e01059-14
4. "A bacteriophage transcription regulator inhibits bacterial transcription initiation by p-factor displacement"
   Bing Liu, Andrey Shadrin, Carol Sheppard, Vladimir Mekler, Yingqi Xu, Konstantin Severinov, Steve Matthews, and Sivaramesh Wigneshweraraj
   Nucleic Acids Research, 2014, V. 42, Is. 7, pp. 4294–4305
5. "Molecular basis of RNA polymerase promoter specificity switch revealed through studies of Thermus bacteriophage transcription regulator"
   Severinov K, Minakhin L, Sekine S, Lopatina A, Yokoyama S.
   Bacteriophage, 2014, V. 4, e29399
6.  "Immunoaffinity purification of the functional 20S proteasome from human cells via transient overexpression of specific proteasome subunits"
   Veronika A. Livinskaya, Nickolai A. Barlev, Andrey A. Nikiforov
   Protein Expression and Purification, 2014, 97, pp. 37–43
7. "CRISPR-Cas: outstanding questions remain: Comment on “Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems” by Edwin L. Cooper and Nicola Overstreet"
   K. Severinov
   Physics of Life Reviews, 2014, V. 11, Is. 1, pp. 146–148
8. "Structural basis for promoter specificity switching of RNA polymerase by a phage factor"
   Shunsuke Tagami, Shun-ichi Sekine, Leonid Minakhin, Daria Esyunina, Ryogo Akasaka, Mikako Shirouzu, Andrey Kulbachinskiy, Konstantin Severinov, Shigeyuki Yokoyama
   Genes & Development, 2014, V. 28, pp. 521-531
9. "The sabotage of the bacterial transcription machinery by a small bacteriophage protein"
   Bing Liu, Andrey Shadrin, Carol Sheppard, Vladimir Mekler, Yingqi Xu, Konstantin Severinov, Steve Matthews, Sivaramesh Wigneshweraraj
   Bacteriophage, 2014, V. 4, e28520
10. "The C-terminal part of microcin B is crucial for DNA gyrase inhibition and antibiotic uptake by sensitive cells"
    Irina Shkundina, Marina Serebryakova, Konstantin Severinov
    Journal of Bacteriology, 2014, V. 196, Is. 9, pp. 1759-1767
11. "Development and validation of a LC-MS/MS method for D-cycloserine determination in human plasma for bioequivalence study"
    Dmitry V. Yaroshenko, Alexander V. Grigoriev, Alla A. Sidorova
    Analytical and Bioanalytical Chemistry, 2014, V. 406, Is. 3, pp 923-927

2013

1. "Электронная структура возбужденных молекул аргон-ксенон в спектральной области вблизи возбужденных состояний ксенона"
   Л.П. Ракчеева, П.Ю. Сердобинцев, А.А. Беляева, И.А. Шевкунов, А.А. Пастор, М.А. Ходорковский
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 4-1, с. 37-47
2. "ЦКП «Аналитический центр нано- и биотехнологий ГОУ «СПбГПУ» – активный игрок на российском и международном рынках научных исследований"
   Ходорковский М.А., Райчук Д.Ю.
   Нанотехнологии. Экология. Производство, 2013, № 5, С. 030-033
3. "New supramolecular AuI-CuI complex as potential luminescent label for proteins"
   Krupenya, Dmitry; Snegurov, Pavel; Grachova, Elena; Gurzhiy, Vladislav; Tunik, Sergey; Melnikov, Alexey; Serdobintsev, Pavel; Vlakh, Evgenia; Sinitsyna, Ekaterina; Tennikova, Tatiana
   Inorganic Chemistry, 2013 V. 52, Is. 21, pp. 12521–12528
4. "Gelsolin-Like Activation of Villin: Calcium-Sensitivity of the Long Helix In Domain 6"
   Stanislav O. Fedechkin , Jacob A. Brockerman , Danielle A. Pfaff , Lucian Burns , Terry Webb , Alexander Nelson , Fengli Zhang , Anton V Sabantsev, Alexey S Melnikov , Christopher James McKnight , Serge L. Smirnov
   Biochemistry, 2013, V. 52, Is. 45, pp. 7890–7900
5. "Activity and bacterial diversity of snow around Russian Antarctic stations"
   Anna Lopatina, Vjacheslav Krylenkov, Konstantin Severinov
   Research in Microbiology, 2013, V. 164, Is. 9, pp. 949–958
6. "12-Fold symmetry of the putative portal protein from the Thermus thermophilus bacteriophage G20C determined by X-ray analysis"
   Lowri S. Williams, Vladimir M. Levdikov, Leonid Minakhin, Konstantin Severinov and Alfred A. Antson
   Acta Crystallographica Section F, Structural Biology and Crystallization Communications, 2013, V. 69, Is. 11, pp. 1239–1241
7. "Mass-resolved two-photon and photoelectron spectra of ArXe in the region of Хе* 7р, 6р', 6d"
   L.P. Rakcheeva, P.Yu. Serdobintsev, A.A. Belyaeva, I.A. Shevkunov, A.S. Melnikov, A.A. Nakozina, A.A. Pastor, M.A. Khodorkovskii
   Journal of Chemical Physics, 2013, 139, 174304
8. "Нелинейные особенности спектра частот сигналов при исследовании биомолекулярной смеси в масс-спектрометре ионного циклотронного резонанса с преобразованием Фурье"
   О.Ю. Цыбин, А.Н. Петров, Е.Н. Величко, Т.О. Артамонова, М.А. Ходорковский
   Масс-спектрометрия, 2013, т. 10, № 3, с. 149-157
9. "Формирование мембранных тубулярных структур из гепатоцитов человека"
   Н.Е. Морозова, А.Д. Ведяйкин, А.В. Сабанцев, Г.Е. Побегалова, C.В. Мурашов, М.А. Ходорковский
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 3, с. 167-176
10. "Structure of Microcin B-Like Compounds Produced by Pseudomonas syringae and Species Specificity of Their Antibacterial Action"
    Mikhail Metelev, Marina Serebryakova, Dmitry Ghilarov, Youfu Zhao, Konstantin Severinov
    Journal of Bacteriology, 2013, V. 195, № 18, pp. 4129–4137
11. "Хроматографическое определение силденафила в плазме крови с использованием спектрофотометрического и масс-спектрометрического детектирования"
    Д.В. Ярошенко, А.В. Григорьев, А.А. Сидорова, Л.А. Карцова
    Журнал аналитической химии, 2013, Т. 68, № 9, С. 886-894

English version:

"Chromatographic determination of sildenafil in blood plasma using spectrophotometric and mass-spectrometric detection
D.V. Yaroshenko, A.V. Grigoriev, A.A. Sidorova, L.A. Kartsova
Journal of Analytical Chemistry, 2013, V. 68, Is. 9, pp. 801-808

1. "Towards luminescence vapochromism of the tetranuclear AuI-CuI clusters"
   Julia R. Shakirova, Elena V. Grachova, Alexei S. Melnikov, Vladislav V. Gurzhiy, Sergey P. Tunik, Matti Haukka, Tapani A. Pakkanen and Igor O. Koshevoy
   Organometallics, 2013, V. 32, pp. 4061–4069
2. "Динамика релаксации неравновесных носителей заряда в GaAs с квантовыми точками"
   А.А. Пастор, У.В. Прохорова, П.Ю. Сердобинцев, В.В. Чалдышев, Е. Лыгина
   Вестник СПбГУ, Серия 4, 2013, Вып. 2, с. 10-13
3. "Биосинтез гекса- и пентамерных хитоолигосахаридов с помощью N-ацетилглюкозаминилтрансферазы ризобиальных бактерий"
   И.В. Леппянен, Т.О. Артамонова, С.А. Лопатин, В.П. Варламов, И.А. Тихонович, Е.А. Долгих
   Экологическая генетика, 2013, Т. XI, № 2, с. 58-72
4. "Надмолекулярные структуры, образуемые in vitro белком TIP49a"
   Д.В. Лебедев, М.Л. Соколова, Я.В. Федорова, Г.Е. Побегалов, Д.Б. Червякова, С.Б. Ланда, М.А. Ходорковский
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 2, с. 156-162
5. "Структурная стабильность домена 6 виллина в отсутствие ионов кальция"
   А.П. Якимов, С.О. Федечкин, К.Б. Нериновский, К.А. Шабалин, С.Л. Смирнов
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 2, с. 149-155
6. "Характеристика евразийских изолятов Alternaria sonchi по морфолого-культуральным, молекулярным и физиолого-биохимическим признакам"
   А. О. Берестецкий, В. М. Терлецкий, Ф. Б. Ганнибал, И. А. Казарцев, М. А. Ходорковский
   Микология и фитопатология, 2013, т. 47, № 3, с. 120-128
7. "Влияние отжига на время жизни неравновесных носителей заряда в GaAs, выращенном при низкой температуре"
   А.А.Пастор, У.В.Прохорова, П.Ю.Сердобинцев, В.В.Чалдышев, М.А.Яговкина
   Физика и техника полупроводников, 2013, т. 47, в. 8, с. 1144-1148

English version:

"Effect of annealing on the nonequilibrium carrier lifetime in GaAs grown at low temperatures"
A. Pastor, U. V. Prokhorova, P. Yu. Serdobintsev, V. V. Chaldyshev, M. A. Yagovkina
Semiconductors, 2013, V. 47, Is. 8, pp. 1137-1140

1. "Изменение механических свойств молекулы ДНК при взаимодействии с интеркалирующим красителем YOYO-1"
   Г.Е. Побегалов, А.Н. Арсениев, А.Д. Ведяйкин, М.Л. Соколова, Я.В. Федорова, А.В. Сабанцев
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 1, с. 136-143
2. "Неканонические РНК-полимеразы гигантских бактериофагов типа φKZ"
   М.В. Якунина, Д.Н. Воронцова, Л.С. Минахин
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2013, № 1, с. 120-127
3. "Определение цисплатина в плазме крови методом хромато-масс-спектрометрии"
   Д.В. Ярошенко, А.В. Григорьев, А.А. Сидорова, Л.А. Карцова
   Журнал аналитической химии, 2013, т. 68, № 2, с. 170-174

English version:

"Determination of cisplatin in blood plasma by liquid chromatography with mass spectrometry detection"
D. V. Yaroshenko, A. V. Grigoriev, A. A. Sidorova, L. A. Kartsova
Journal of Analytical Chemistry, 2013, V. 68, Is. 2, pp. 156-160

1. "Разработка хроматографического и электрофоретического методов определения винбластина в плазме крови и ткани предстательной железы"
   А.А. Сидорова, Д.В. Ярошенко, Е.А. Мурашко, А.В. Григорьев
   Журнал аналитической химии, 2013, т. 68, № 3, с. 284-290

English version:

"Development of chromatographic and electrophoretic methods for determining vinblastine in blood plasma and prostate gland tissue"
A. A. Sidorova, D. V. Yaroshenko, E. A. Murashko, A. V. Grigor’ev
Journal of Analytical Chemistry, 2013, V. 68, Is. 3, pp. 265-271

1. "Sky-Blue Luminescent Au^I–Ag^I Alkynyl-Phosphine Clusters"
   Igor O. Koshevoy, Antti J. Karttunen, Ilya S. Kritchenkou, Dmitrii V. Krupenya, Stanislav I. Selivanov, Alexei S. Melnikov, Sergey P. Tunik, Matti Haukka, Tapani A. Pakkanen
   Inorganic Chemistry, 2013, V. 52, Is. 7, pp. 3663-3673
2. "Synthesis, Structural Characterization, and Photophysical Properties of Au^I–Cu^I Heterometallic Alkynyl Cluster Complexes Containing N-Protected Amino Acid Groups"
   Pavel Yu. Dereza, Ilya S. Krytchankou, Dmitry V. Krupenya, Vladislav V. Gurzhiy, Igor O. Koshevoy, Alexey S. Melnikov, Sergey P. Tunik
   Journal of Inorganic and General Chemistry, 2013, V. 639, Is. 2, pp. 398–402
3. "Synthesis, characterization and photophysical properties of gold(I)–copper(I) alkynyl clusters with 1,4-bis(diphenylphosphino)butane, effect of the diphosphine ligand on luminescence characteristics"
   Ilya S. Krytchankou, Dmitry V. Krupenya, Vladislav V. Gurzhiy, Andrey A. Belyaev, Antti J. Karttunen, Igor O. Koshevoy, Alexey S. Melnikov, Sergey P. Tunik
   Journal of Organometallic Chemistry, 2013, V. 723, pp. 65–71

2012

1. "Сравнительная структурная и функциональная характеристика разных форм красного пигмента дрожжей Saccharomyces cerevisiae и его синтетического аналога"
   Т.Р. Амен, Е.В. Михайлова, В.В. Аленин, А.В. Артемов, П.А. Дементьев, М.А. Ходорковский, Т.О. Артамонов, И.М. Кузнецова, Т.Р. Сойдла, О.В Невзглядова
   Цитология, 2012, Т. 54 Вып. 11. с. 853–861
2. "Comparative structural and functional characteristics of different forms of Saccharomyces cerevisiae red pigment and its synthetic analogue"
   T.R. Amen, E.V. Mikhailova, V.V. Alenin, A.V. Artyomov, P.A. Dementyev, M.A. Khodorkovskii, T.O. Artamonova, I.M. Kyznetsova, T.R. Soidla, O.V. Nevzglyadova
   Tsitologiya, 2012, V. 54, Is. 11, pp. 853-861

English version:

"Structural and functional characteristics of various forms of red pigment of yeast Saccharomyces cerevisiae and its synthetic analog"
T. R. Amen, E. V. Mikhailova, V. V. Alenin, A. V. Artyomov, P. A. Dementyev, M. A. Khodorkovskii, T. O. Artamonova, I. M. Kuznetsova, T. R. Soidla, O. V. Nevzglyadova
Cell and Tissue Biology, 2013, V. 7, Is. 1, pp. 86-94

1. "Получение и анализ экзосом, секретируемых злокачественно трансформированными клетками человека в системах in vitro"
   Т.А. Штам, С.Н. Нарыжный, С.Б. Ланда, В.С. Бурдаков, Т.О. Артамонова, М.В. Филатов
   Цитология, 2012, Т. 54, № 5, с. 430–438

"Isolation and proteomic analysis of exosomes secreted by human cancer cells in vitro"
T.A. Shtam, S.N. Naryzhny, S.B. Landa, V.S. Burdackov, T.O. Artamonova, M.V. Filatov
Tsitologiya, 2012, V. 54 Is. 5, pp. 430–438

English version:

"Purification and in vitro analysis of exosomes secreted by malignantly transformed human cells"
T.A. Shtam, S.N. Naryzhny, S.B. Landa, V.S. Burdakov, T.O. Artamonova, M.V. Filatov
Cell and Tissue Biology, July 2012, Volume 6, Issue 4, pp. 317-325

1. "Различные варианты on-line концентрирования при электрофоретическом определении аминов, аминокислот и стероидных гормонов"
   Л. А. Карцова, А. А. Сидорова, Е. А. Бессонова
   Журнал Аналитической Химии, 2012, том 67, № 7, с. 708-714

English version:

"Different methods of on-line preconcentration in the electrophoretic determination of amines, amino acids, and steroid hormones"
Kartsova L. A., Sidorova A. A., Bessonova E. A.
Journal of Analytical Chemistry, 2012, V. 67, Is. 7, pp. 642-648

1. "Определение диагностических маркеров мочекаменной болезни с использованием метода капиллярного электрофореза"
   А. А. Сидорова, А. В. Григорьев
   Журнал Аналитической Химии, 2012, том 67, № 5, С. 535-542

English version:

Determination of diagnostical markers of urolithiasis by capillary electrophoresis
Sidorova A. A., Grigoriev A. V.
Journal of Analytical Chemistry, 2012, V. 67, Is. 5, pp. 478-485

1. "Concentrating of Higher Metallofullerenes"
   Yu. S. Grushko, V. S. Kozlov, T. O. Artamonova, M. A. Khodorkovskii
   Fullerenes, Nanotubes and Carbon Nanostructures, 2012, V. 20, Is. 4-7, pp. 351-353
2. "Polyclonal Antibodies Against Human Proteasome Subunits PSMA3, PSMA5, and PSMB5"
   Veronika A. Livinskaya, Vadim A. Ivanov, Olga A. Fedorova, Daria N. Vorontsova, Nick A. Barlev, Andrey A. Nikiforov
   HYBRIDOMA, 2012, V. 31, № 4, p. 272-278
3. "Large-Scale Conformational Flexibility Determines the Properties of AAA+ TIP49 ATPases"
   Michael Petukhov, Adilia Dagkessamanskaja, Martin Bommer, Tracey Barrett, Irina Tsaneva, Alexander Yakimov, Richard Queval, Alexey Shvetsov, Mikhail Khodorkovskiy, Emmanuel Käs and Mikhail Grigoriev
   Structure, 2012, 20, p. 1321-1331
4. "Современные представления о структурной организации хроматина"
   Илатовский А.В., Лебедев Д.В., Филатов М.В., Петухов М.Г., Исаев-Иванов В.В.
   Цитология, 2012, Т. 54, № 4, с. 298-306
5. "SANS spectra of the fractal supernucleosomal chromatin structure models"
   Andrey V Ilatovskiy, Dmitry V Lebedev, Michael V Filatov, Michael G Petukhov and Vladimir V Isaev-Ivanov
   Journal of Physics: Conference Series, 2012, 351, 012007
6. "Модернизация флуоресцентного микроскопа для исследования биологических структур с субдифракционным разрешением"
   Сабанцев А.В., Побегалов Г.Е., Мурашов С.В., Мельников А.С., Ходорковский М.А.
   «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2012, № 2, с. 94-99
7. "Выделение и изучение химической структуры токсина с инсектицидной активностью из гриба Lecanicillium muscarium"
   Г. В. Митина, О. С. Юзихин, Ф. Ш. Исангалин, А. П. Якимов
   Научное Приборостроение, 2012, Т. 22, № 2, c. 3-10
8. "Structural Insights into Interaction between Mammalian Methionine Sulfoxide Reductase B1 and Thioredoxin"
   Olena Dobrovolska, Georgy Rychkov, Elena Shumilina, Kirill Nerinovski, Alexander Schmidt, Konstantin Shabalin, Alexander Yakimov, Alexander Dikiy
   Journal of Biomedicine and Biotechnology, vol. 2012, Article ID 586539, 9 pages, 2012
9. "Влияние антимикробного пептида бактенецина 5 и его укороченных фрагментов на пролиферацию фибробластов кожи человека и на процесс заживления ран у экспериментальных животных"
   Ямщикова Е.В., Орлов Д.С., Пазина Т.Ю., Трулев А.С., Орлов С.Б., Григорьев А.В., Колодкин Н.И, Кокряков В.Н., Шамова О.В.
   Современные проблемы науки и образования, 2012, № 3
10. "Luminescent Au^I-Cu^I triphosphine clusters containing extended linear arylacetylenes"
    Julia R. Shakirova, Elena V. Grachova, Anna A. Melekhova, Dmitrii V. Krupenya, Vladislav V. Gurzhiy, Antti J. Karttunen, Igor O. Koshevoy, Alexei S. Melnikov, and Sergey P. Tunik
    European Journal of Inorganic Chemistry, 2012, Is. 25, p. 4048-4056
11. "Luminescent heterometallic gold–copper alkynyl complexes stabilized by tridentate phosphine"
    Julia R. Shakirova, Elena V. Grachova, Vladislav V. Gurzhiy, Igor O. Koshevoy, Alexei S. Melnikov, Olga V. Sizova, Sergey P. Tunik, Antonio Laguna
    Dalton Transactions, 2012, v. 41, p. 2941-2949
12. "Исследование разряда в смеси аргона с парами воды в присутствии катализатора двуокиси титана"
    А.А. Пастор, Н.А. Тимофеев, И.А. Шевкунов, М.А. Ходорковский, С.В. Мурашов
    Вестник СПбГУ. Серия 4, 2012, Вып. 3, с. 149-152
13. "Возбужденные состояния молекул аргон-ксенон в области далекого вакуумного ультрафиолета, исследованные методом (3+1) REMPI"
    Л.П. Ракчеева, М.А. Ходорковский, С.В. Мурашов, А.А. Беляева, П.Ю. Сердобинцев
    «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2012, № 2, с. 79-85
14. "Исследование нечетных электронных состояний молекул Xe₂ в области Xe*(5p⁵6p, 5d, 7s, 6d) методом резонансной многофотонной ионизации"
    М.А. Ходорковский, А.А. Беляева, Л.П. Ракчеева, П.Ю. Сердобинцев, А.С. Мельников, И.А. Шевкунов, Н.А. Тимофеев, А.А. Пастор
    Оптика и спектроскопия, 2012, Т. 112, № 5, с. 738-755

English version:

"The study of ungerade electronic states of the Xe₂ molecules in the region of Xe*(5p⁵6p, 5d, 7s, 6d) by the resonance multiphoton ionization method"
M.A. Khodorkovskii, A.A. Belyaeva, L.P. Rakcheeva, P.Yu. Serdobintsev, A.S. Mel’nikov, I.A. Shevkunov, N.A. Timofeev, A.A. Pastor
Optics and Spectroscopy, 2012, V. 112, No. 5, p. 679-695

1. "Исследование углеродных графитоподобных структур методом лазерной масс-спектрометрии"
   М.А. Ходорковский, С.В. Мурашов, Т.О. Артамонова, Л.П. Ракчеева, С. Любчик, А.Н. Чусов
   Журнал технической физики, 2012, том 82, вып. 6, с. 127-131

English version:

Investigation of carbon graphite-like structures by laser mass spectrometry
M.A. Khodorkovskii, S.V. Murashov, T.O. Artamonova, L.P. Rakcheeva, S. Lyubchik,A.N. Chusov
Technical Physics, 2012, V. 57, No. 6, p. 861-864

1. "Экспериментальное определение времени жизни носителей заряда в GaAs, выращенном при низкой температуре"
   А.А. Пастор, П.Ю. Сердобинцев, В.В. Чалдышев
   Физика и техника полупроводников, 2012, том 46, вып. 5, c. 637-640

English version:

"Experimental evaluation of the carrier lifetime in GaAs grown at low temperature"
A. A. Pastor, P. Yu. Serdobintsev, V. V. Chaldyshev
Semiconductors, 2012, V. 46, No. 5, p. 619-621

2011

•  
  1. "Анализ молекулярных механизмов растяжения коротких фрагментов двухнитевых ДНК"
     Руденко Е.Д., Сабанцев А.В., Швецов А.В., Илатовский А.В., Червякова Д.Б., Григорьев М.Ю., Петухов М.Г.
     «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», № 4, 2011, c. 147-154
  2. "Определение электрокинетических свойств полупроводниковых материалов для создания нанокомпозитных катодов"
     Ходорковский М.А., Сердобинцев П.Ю., Пастор А.А., Тимофеев Н.А., Накозина А.А.
     «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», № 4, 2011, c. 39-43
  3. "Modeling and small-angle neutron scattering spectra of chromatin supernucleosomal structures at genome scale"
     Andrey V. Ilatovskiy, Dmitry V. Lebedev, Michael V. Filatov, Mikhail Grigoriev, Michael G. Petukhov, Vladimir V. Isaev-Ivanov
     Journal of Applied Physics, 2011, V. 110, 102217
  4. "Влияниекрасногопигмента Saccharomyces cerevisiae наобразованиеинсулиновыхфибрилл in vitro"
     Михайлова Е.В., Артемов А.В., Снигиревская Е.С., Артамонова Т.О., Ходорковский М. А., Сойдла Т. Р., Невзглядова О.В.
     Цитология, 2011, V. 53, № 10, с. 808–814

English version:

"Effect of red pigment on insulin fibril formation in vitro"
E. V. Mikhailova, A. V. Artemov, E. S. Snigirevskaya, T. O. Artamonova, M. A. Khodorkovskii, T. R. Soidla, O. V. Nevzglyadova
Cell and Tissue Biology, 2011, V. 5, № 6, pp. 580-585

•  
  1. "Особенности процессов кластеризации молекул фуллеренов при лазерной абляции"
     М.А. Ходорковский, C.В. Мурашов, С. Любчик, Л.П. Ракчеева, Т.О. Артамонова, А.В. Сабанцев
     «Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», № 3, 2011, с. 50-56
  2. "Coinage metal complexes of 2-diphenylphosphino-3-methylindole"
     Igor O. Koshevoy, Julia R. Shakirova, Alexei S. Melnikov, Matti Haukka, Sergey P. Tunik, Tapani A. Pakkanena
     Dalton Transactions, 2011, V. 40, pp. 7927-7933
  3. "The effect of red pigment on amyloidization of yeast proteins"
     Olga V. Nevzglyadova, Irina M. Kuznetsova, Ekaterina V. Mikhailova, Tatyana O. Artamonova, Alexey V. Artemov, Alexey G. Mittenberg, Elena I. Kostyleva, Konstantin K. Turoverov, Mikhail A. Khodorkovskii, Tonu R. Soidla
     Yeast, 2011, V. 28, N. 7, pp. 505-526
  4. "Mass spectrometry and biochemical analysis of RNA polymerase II: targeting by protein phosphatase-1"
     M. Jerebtsova, S.A. Klotchenko, T.O. Artamonova, T. Ammosova, K. Washington, V.V. Egorov, A.A. Shaldzhyan, M.V. Sergeeva, E.A. Zatulovskiy, O.A. Temkina, M.G. Petukhov, A.V. Vasin, M.A. Khodorkovskii, Yu.N. Orlov, S. Nekhai
     Molecular and Cellular Biochemistry, 2011, V. 347, pp. 79–87

2010

•  
  1. "Электронные спектры молекул ХеNe в области 77100-90100 см^-1 вблизи Хе*(6p, 5d, 6p’ 7s, 7p, 6d), полученные методами (3+1) REMPI и (2+1) REMPI"
     М.А. Ходорковский, C.В. Мурашов, Т.О.Aртамонова, А.А. Беляева, Л.П. Ракчеева, А.А. Пастор, П.Ю. Сердобинцев, Н.А. Тимофеев, И.А. Шевкунов, И.А. Дементьев, R. Hallin, J. Nordgren
     Оптика и спектроскопия, 2010, Т. 108, № 6, с. 947–962

English version:

"Electronic Spectra of XeNe Molecules in the Range 77100–90100 cm^–1 near Xe* (6p, 5d, 6p', 7s, 7p, 6d) Obtained by the (3+1) REMPI and (2+1) REMPI Methods"
M.A. Khodorkovskiі , S.V. Murashov, T.O. Artamonova, A.A. Belyaeva, L.P. Rakcheeva, A.A. Pastor, P.Yu. Serdobintsev, N.A. Timofeev, I.A. Shevkunov, I.A. Dement’ev, R. Hallin, J. Nordgren
Optics and Spectroscopy, 2010, V. 108, No. 6, pp. 899–914

•  
  1. "Electronic spectra of ArXe molecules in region of Xe* (6s', 6p, 5d), 77000-80200 cm^-1, using resonantly enhanced multiphoton ionization"
     M.A. Khodorkovskii, S.V. Murashov, T.O. Artamonova, A.A. Beliaeva, L.P. Rakcheeva, A.A. Pastor, P.Yu. Serdobintsev, N.A. Timofeev, I.A. Shevkunov, I.A. Dement’ev, J. Nordgren
     Journal of Physics B: Atomic, Molecular and Optical Physics, 2010, V. 43, 155101
  2. "Reversible protonation of amine-functionalized luminescent Au-Cu clusters: characterization, photophysical and theoretical studies"
     I.O. Koshevoy, A.J. Karttunen, S.P. Tunik, J. Jänis, M. Haukka, A.S. Melnikov, P.Yu. Serdobintsev, T.A. Pakkanen
     Dalton Transactions, 2010, V. 39, pp. 2676-2683
  3. "Synthesis, Structural Characterization and Luminescence Studies of Di- and Trinuclear Gold(I) Alkynyl-phosphine Complexes"
     Igor O. Koshevoy, Laura Koskinen, Ekaterina S. Smirnova, Matti Haukka, Tapani A. Pakkanen, Alexei S. Melnikov, Sergey P. Tunik
     Journal of Inorganic and General Chemistry, 2010, V. 636, Is. 5 , pp. 795-802
  4. "Application of similarity laws as a light source diagnostics"
     D. Michael, M. Khodorkovskii, A. Pastor, N. Timofeev, G. Zissis
     Journal of Physics D: Applied Physics, 2010, V. 43, 234005
  5. "Электронные спектры двухатомных молекул аргон-ксенон в области возбуждённых атомов ксенона"
     М.А. Ходорковский, С.В. Мурашов, А.А. Беляева, П.Ю. Сердобинцев, J. Nordgren
     Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2010, № 4, c. 21-27
  6. "Особенности структурной упорядоченности пленок фуллерена, осажденных с различной кинетической энергией"
     C.В. Мурашов, С. Любчик, Л.П. Ракчеева, А.Л. Шахмин, Т.О. Артамонова
     Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», 2010, № 4, с. 141-145
  7. "Electronic spectra of ArXe molecules in the region of Xe* (5d, 7s, 7p, 6p′), 80300-89500 cm^-1, using resonantly enhanced multiphoton ionization"
     M.A. Khodorkovskii, S.V. Murashov, T.O. Artamonova, A.A. Beliaeva, L.P. Rakcheeva, A.A. Pastor, P.Yu. Serdobintsev, N.A. Timofeev, I.A. Shevkunov, I.A. Dement’ev, J. Nordgren
     Journal of Physics B: Atomic, Molecular and Optical Physics, 2010, V. 43, 235101
  8. "Assembly of the heterometallic Au(I)–M(I) (M = Cu, Ag) clusters containing the dialkyne-derived diphosphines: synthesis, luminescence and theoretical studies"
     Igor O. Koshevoy, Polina V. Ostrova, Antti J. Karttunen, Alexei S. Melnikov, Mikhail A. Khodorkovskiy, Matti Haukka, Janne Janis, Sergey P. Tunik, Tapani A. Pakkanen
     Dalton Transactions, 2010, V. 39, pp. 9022-9031
  9. "Снижение конформационной подвижности белка метионин-сульфоксид редуктазы B1 мыши в результате окисления"
     Г.Н. Рычков, Н.И. Поваров, А.П. Якимов, К.А. Шабалин
     Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», № 3, 2010, с. 21-26
  10. "Модель пространственной структуры комплекса метионин-сульфоксид редуктазы B1 и тиорексина окислительно-восстановительной системы мыши"
      Г.Н. Рычков, К.О. Золотухин, К.Б. Нериновский, А.И. Дикий
      Научно-технические ведомости СПбГПУ» серия «Физико-математические науки», № 3, 2010, с. 27-32
  11. "Halide-Directed Assembly of Multicomponent Systems: Highly Ordered Au^I–Ag^I Molecular Aggregates"
      Igor O. Koshevoy, Antti J. Karttunen, Julia R. Shakirova, Alexei S. Melnikov, Matti Haukka, Sergey P. Tunik, Tapani A. Pakkanen
      Angewandte Chemie International Edition, 2010, V. 49, N. 47, pp. 8864–8866
  12. "MRI-Contrasting System Based on Water-Soluble Fullerene/Gd-Metallofullerene Mixture"
      Yu. S. Grushko, V. S. Kozlov, V. P. Sedov, S. G. Kolesnik, V. T. Lebedev, V. A. Shilin, M. A. Khodorkovsky, T. O. Artamonova, A. L. Shakhmin, V. V. Shamanin, E. Yu. Melenevskaya, S. G. Konnikov, M. V. Zamorianskaya, E. V. Tsyrlina, P. I. Krzhivitsky
      Fullerenes, Nanotubes and Carbon Nanostructures, 2010, V. 18,  Is. 4-6, pp. 417-421

2009

•  
  1. "Исследование процессов ионизации кластеров Ar_n, (H2O)_n, Ar_n(H2O)_m электронным ударом"
     М.А. Ходорковский, Т.О. Артамонова, С.В. Мурашов, D. Michael, Л.П. Ракчеева, А.А. Беляева, Н.А. Тимофеев, А.С. Мельников, А.Л. Шахмин, И.А. Дементьев
     Журнал Технической Физики, 2009, Т. 79, В. 1, с. 3-9

English version:

"Electron Impact Ionization of Ar_n, (H2O)_n, Ar_n(H2O)_m Clusters"
M.A. Khodorkovskii, T.O. Artamonova, S.V. Murashov, D. Michael, L.P. Rakcheeva, A.A. Belyaeva, N.A. Timofeev, A.S. Mel’nikov, A.L. Shakhmin, I.A. Dement’ev
Technical Physics, 2009, V. 54, No. 1, pp. 1–6

•  
  1. "Synthesis, Characterization, Photophysical and Theoretical Studies of the Supramolecular Gold(I)–Silver(I) Alkynyl-Phosphine Complexes"
     Igor O. Koshevoy, Antti J. Karttunen, Sergey P. Tunik, Matti Haukka, Stanislav I. Selivanov, Alexei S. Melnikov, Pavel Yu. Serdobintsev, Tapani A. Pakkanen
     Organometallics, 2009, V. 28, No. 5, pp. 1369–1376
  2. "Исследование свойств фуллереновых структур методом лазерной масс-спектрометрии"
     М.А. Ходорковский, С.В. Мурашов, Т.О. Артамонова, Л.П. Ракчеева, А.А. Беляева, А.С. Мельников, А.Л. Шахмин
     Журнал Технической Физики, 2009, Т. 79, В. 10, с. 147-150

English version:

"Laser Mass Spectrometry Study of the Properties of Fullerene Structures"
M.A. Khodorkovskii, S.V. Murashov, T.O. Artamonova, L.P. Rakcheeva, A.A. Belyaeva, A.S. Mel’nikov, A.L. Shakhmin
Technical Physics, 2009, V. 54, No. 10, pp. 1548–1551

•  
  1. "Low pressure water vapour discharge as a light source: II. Electrical characteristics"
     E. Artamonova, T. Artamonova, A. Beliaeva, M. Khodorkovskii, A. Melnikov, D. Michael, V. Milenin, S. Murashov, L. Rakcheeva, N. Timofeev, G. Zissis
     Journal of Physics D: Applied Physics, 2009, V. 42, 175204
  2. "Excitation of water molecules by electron impact with formation of OH-radicals in the A²Σ⁺ state"
     M A Khodorkovskii, S V Murashov, T O Artamonova, L P Rakcheeva, A A Beliaeva, A L Shakhmin, D Michael, N A Timofeev, A S Mel'nikov, I A Shevkunov and G Zissis
     Journal of Physics B: Atomic, Molecular and Optical Physics, 2009, V. 42, 215201

2008

•  
  1. "Исследование нижних электронных состояний молекул Хе₂, ХeKr, XeAr методом резонансной многофотонной ионизации"
     М.А. Ходорковский, А.А. Беляева, Л.П. Ракчеева, П.Ю. Сердобинцев, А.А. Пастор, А.С. Мельников, Н.А. Тимофеев, R. Hallin, K. Siegbahn
     Оптика и спектроскопия, 2008, Т. 104, № 5, c. 748–759

English version:

"Study of the Lowest Electronic States of Xe₂, XeKr, and XeAr Molecules by the Method of Multiphoton Resonance Ionization"
M.A. Khodorkovskii, A.A. Belyaeva, L.P. Rakcheeva, P.Yu. Serdobintsev, A.A. Pastor, A.S. Mel’nikov, N.A. Timofeev, R. Hallin, K. Seigbahn
Optics and Spectroscopy, 2008, V. 104, No. 5, pp. 674–685

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  1. "Self-Assembly of Supramolecular Luminescent Au^I–Cu^I Complexes: "Wrapping" an Au₆Cu₆ Cluster in a [Au₃(diphosphine)₃]³⁺ "Belt""
     Igor O. Koshevoy, Laura Koskinen, Matti Haukka, Sergey P. Tunik, Pavel Yu. Serdobintsev, Alexey S. Melnikov, Tapani A. Pakkanen
     Angewandte Chemie International Edition, 2008, V. 47, pp. 3942–3945
  2. "Supramolecular Luminescent Gold(I)-Copper(I) Complexes: Self-assembly of the Au_xCu_y Clusters inside the [Au₃(diphosphine)₃]³⁺ Triangles"
     Igor O. Koshevoy, Antti J. Karttunen, Sergey P. Tunik, Matti Haukka, Stanislav I. Selivanov, Alexei S. Melnikov, Pavel Yu. Serdobintsev, Mikhail A. Khodorkovskiy, Tapani A. Pakkanen
     Inorganic Chemistry, 2008, V. 47, pp. 9478-9488
  3. "Low pressure water vapor discharge as a light source: I. Spectroscopic characteristics and efficiency"
     E. Artamonova, T. Artamonova, A. Beliaeva, D. Gorbov, M. Khodorkovskii, A. Melnikov, D. Michael, V. Milenin, S. Murashov, L. Rakcheeva, N.Timofeev
     Journal of Physics D: Applied Physics, 2008, V. 41, 155206

2007

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  1. "Многофотонные масс-спектры молекул XeKr в области возбужденных атомов Xe*6p[5/2]_2,3"
     М.А. Ходорковский, А.А. Беляева, Л.П. Ракчеева, А.А. Пастор, П.Ю. Сердобинцев, Н.А. Тимофеев, И.А. Шевкунов, R. Hallin, K. Siegbahn
     Оптика и спектроскопия, 2007, Т. 102, № 6, c. 908–915

English version:

"Multiphoton Mass Spectra of XeKr Molecules in the Range of Excited Xe*6p[5/2]_2,3"
M.A. Khodorkovskii, A.A. Belyaeva, L.P. Rakcheeva, A.A. Pastor, P.Yu. Serdobintsev, I.A. Shevkunov , R. Hallin, K. Seigbahn
Optics and Spectroscopy, 2007, V. 102, No. 6, pp. 834–841

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  1. "Water mediated modification of structure and physical chemical properties of nanocarbons"
     N.N. Rozhkova, A.V. Gribanov, M.A. Khodorkovskii
     Diamond & Related Materials, 2007, V. 16, pp. 2104-2108
  2. "Исследование состава смеси паров воды с аргоном методом масс-спектрометрии cверхзвукового молекулярного пучка"
     М.А. Ходорковский, Т.О. Артамонова, С.В. Мурашов, D. Michael, Л.П. Ракчеева, А.А. Беляева, Н.А. Тимофеев, А.С. Мельников, А.Л. Шахмин
     Журнал Технической Физики, 2007, Т. 77, В. 10, С. 16-23

English version:

"Composition of a Water Vapor–Argon Mixture Determined by the Mass Spectrometry of a Supersonic Molecular Beam"
M.A. Khodorkovskii, T.O. Artamonova, S.V. Murashov, D.Michael, L.P. Rakcheeva, A.A. Belyaeva, N. A.Timofeev, A.S. Mel’nikov, A.L. Shakhmin
Technical Physics, 2007, Vol. 52, No. 10, pp. 1263–1270

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  1. "Study of Dynamic and Nonlinear Optical Properties of Polyaniline–Fullerene–Liquid Crystal Structures"
     Yu.A. Zubtsova, P.Ya. Vasilyev, S.V. Murashov, N.V. Kamanina
     Mol. Cryst. Liq. Cryst., 2007, V. 467, pp. 171–180

2006

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  1. "Многофотонные масс-спектры молекул Xe2 в области возбужденных атомов Xe*(6p, 5d)"
     М.А. Ходорковский, А.А. Беляева, Л.П. Ракчеева, Т.О. Артамонова, П.Ю. Сердобинцев, А.А. Пастор, А.С. Козлов, С.В. Мурашов, А.З. Девдариани, R. Hallin, K. Seigbahn
     Оптика и спектроскопия, 2006, Т. 100, № 4, c. 549–562

English version:

"Multiphoton Mass Spectra of Xe₂ Molecules in the Range of Excited Xe*(6p, 5d) Atoms"
       M.A. Khodorkovskii, A.A. Belyaeva, L.P. Rakcheeva, T.O.       Artamonova,   P.Yu. Serdobintsev, A.A. Pastor, A.S. Kozlov, S.V. Murashov, A.Z. Devdariani, R. Hallin,    K. Siegbahn
       Optics and Spectroscopy, 2006, V. 100, No. 4, pp. 497-509

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  1. "Исследование свойств пленок фуллеренов, осажденных с высокой кинетической энергией, на различных поверхностях"
     М.А. Ходорковский, С.В. Мурашов, А.Л. Шахмин, Т.О. Артамонова, Л.П. Ракчеева, А.С. Мельников
     Журнал Технической Физики, 2006, Т. 76, В. 7, с. 140-142

English version:

"Properties of Fullerene Films Obtained by High-Kinetic-Energy Deposition on Various Surfaces"
       M.A. Khodorkovskii, S.V. Murashov, A.L. Shakhmin, T.O. Artamonova, L.P. Rakcheeva, A.S. Mel’nikov
       Technical Physics, 2006, V. 51, No. 7, pp. 959–961

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  1. "Масс-спектрометрический анализ цитозолей рецепторположительных и рецепторнегативных новообразований молочных желез"
     Е.В. Цырлина, Т.О. Артамонова, А.А. Раздолина, В.Ф. Семиглазов, М.А. Ходорковский, Л.М. Берштейн
     Вопросы Онкологии, 2006, Т. 52, В. 1, с. 41-42
  2. "Исследование матрицы целлюлозы в качестве нанореактора для получения наночастиц никеля и его оксидов с применением восстановителя дигидрохлорида гидразина"
     Н.Е. Котельникова, Е.Л. Лысенко, Р. Серимаа, К. Пирккалайнен, У. Вайнио, А.Л. Шахмин, Н.Н. Сапрыкина, В.К. Лаврентьев, Д.А. Медведева, Н.П. Новоселов
     Журнал Прикладной Химии, Т. 79, № 11, c. 1924-1928

English version:

"Cellulose matrix as a nanoreactor for preparing nanoparticles of nickel and its oxides using hydrazine dihydrochloride as reductant"
       N.E. Kotel'nikova, E.L. Lysenko, R. Serimaa, K. Pirkkalainen, U. Vainio, A.L. Shakhmin, N.N. Saprykina, V.K. Lavrent'ev, D.A. Medvedeva, N.P. Novoselov
       Russ. J. Appl. Chem., 2006, V. 79, pp. 1902-1906

•  
  1. "Radioactive metallofullerenes: Hot atom chemistry aspects"
     Yu.S. Grushko, M.A. Khodorkovski, V.S. Kozlov, V.A. Shilin, S.A. Grachev, T.O. Artamonova
     Fullerenes Nanotubes and Carbon Nanostructures, 2006, Т. 14, № 2-3, с. 249-259

2005

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  1. "Выявление и идентификация ламинина в составе плазматических мембран клеток асцитной гепатомы зайдела крысы"
     Тюряева И. И., Миргородская О. А., Черепанова О. А., Подольская Е. П., Новиков А. В., Ходорковский М. А., Иванов В. А.
     Цитология, 2005, Т. 47, В. 2, с. 150-162

English version:

"Revelation and identification of laminin in the structure of plasma membrane of ascitic Zajdela hepatoma cells"
       Tiuriaeva, I I; Mirgorodskaia, O A; Cherepanova, O A; Podol'skaia, E P; Novikov, A V; Khodorkovskii, M A; Ivanov, V A
       Tsitologiia, 2005, V. 47, Is. 2, pp. 150-162

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  1. "Исследование состава высоких фуллеренов при абляции углеродсодержащих материалов"
     М.А. Ходорковский, Т.О. Артамонова, С.В. Мурашов, А.Л. Шахмин, А.А. Беляева, Л.П. Ракчеева, И.М. Фонсека, С.Б. Любчик
     Журнал Технической Физики, 2005, Т. 75, В. 10, с. 51-54

English version:

"Composition of High Fullerenes Obtained by Laser Ablation of Carboniferous Materials"
       M.A. Khodorkovskii, T.O. Artamonova, S.V. Murashov, A.L. Shakhmin, A.A. Belyaeva, L.P. Rakcheeva, I.M. Fonseca, S.B. Ljubchik
       Technical Physics, 2005, V. 50, Is. 10, pp. 1301-1304

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  1. "Self-Organization and Dynamic Characteristics Study of Nanostructured Liquid Crystal Compounds"
     N.V. Kamanina, Yu.A. Zubtsova, V.A. Shulev, M.M. Mikhailova, A.I. Denisyuk, S.V. Butyanov, S.V. Murashov, I.Yu. Sapurina
     Solid State Phenomena, 2005, V. 106, pp. 145-148